(11 nodes) Potassium channel inhibitor activity, and Methane metabolism network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLBEP00000005885	Uncharacterized protein. (119 aa)
	LOC110004422	PNPLA domain-containing protein. (843 aa)
	LOC109980924	Uncharacterized protein. (274 aa)
	LOC109980951	Transcription activation suppressor b. (1827 aa)
	LOC109999988	PNPLA domain-containing protein. (905 aa)
	ENSLBEP00000019719	Protein kinase domain-containing protein. (522 aa)
	ENSLBEP00000019752	Uncharacterized protein. (1983 aa)
	ENSLBEP00000020218	WNK lysine deficient protein kinase 1b. (1721 aa)
	ENSLBEP00000034506	Protein kinase domain-containing protein. (356 aa)
	CNTD1	Cyclin N-terminal domain containing 1. (292 aa)
	ENSLBEP00000037592	Protein kinase domain-containing protein. (446 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNTD1	ENSLBEP00000005885	ENSLBEP00000037574	ENSLBEP00000005885	Cyclin N-terminal domain containing 1.	Uncharacterized protein.	0.652
CNTD1	LOC109980924	ENSLBEP00000037574	ENSLBEP00000010939	Cyclin N-terminal domain containing 1.	Uncharacterized protein.	0.652
CNTD1	LOC109999988	ENSLBEP00000037574	ENSLBEP00000015238	Cyclin N-terminal domain containing 1.	PNPLA domain-containing protein.	0.652
CNTD1	LOC110004422	ENSLBEP00000037574	ENSLBEP00000010769	Cyclin N-terminal domain containing 1.	PNPLA domain-containing protein.	0.652
ENSLBEP00000005885	CNTD1	ENSLBEP00000005885	ENSLBEP00000037574	Uncharacterized protein.	Cyclin N-terminal domain containing 1.	0.652
ENSLBEP00000005885	ENSLBEP00000019719	ENSLBEP00000005885	ENSLBEP00000019719	Uncharacterized protein.	Protein kinase domain-containing protein.	0.652
ENSLBEP00000005885	ENSLBEP00000019752	ENSLBEP00000005885	ENSLBEP00000019752	Uncharacterized protein.	Uncharacterized protein.	0.652
ENSLBEP00000005885	ENSLBEP00000020218	ENSLBEP00000005885	ENSLBEP00000020218	Uncharacterized protein.	WNK lysine deficient protein kinase 1b.	0.652
ENSLBEP00000005885	ENSLBEP00000034506	ENSLBEP00000005885	ENSLBEP00000034506	Uncharacterized protein.	Protein kinase domain-containing protein.	0.652
ENSLBEP00000005885	ENSLBEP00000037592	ENSLBEP00000005885	ENSLBEP00000037592	Uncharacterized protein.	Protein kinase domain-containing protein.	0.652
ENSLBEP00000019719	ENSLBEP00000005885	ENSLBEP00000019719	ENSLBEP00000005885	Protein kinase domain-containing protein.	Uncharacterized protein.	0.652
ENSLBEP00000019719	ENSLBEP00000019752	ENSLBEP00000019719	ENSLBEP00000019752	Protein kinase domain-containing protein.	Uncharacterized protein.	0.899
ENSLBEP00000019719	LOC109980924	ENSLBEP00000019719	ENSLBEP00000010939	Protein kinase domain-containing protein.	Uncharacterized protein.	0.652
ENSLBEP00000019719	LOC109999988	ENSLBEP00000019719	ENSLBEP00000015238	Protein kinase domain-containing protein.	PNPLA domain-containing protein.	0.652
ENSLBEP00000019719	LOC110004422	ENSLBEP00000019719	ENSLBEP00000010769	Protein kinase domain-containing protein.	PNPLA domain-containing protein.	0.652
ENSLBEP00000019752	ENSLBEP00000005885	ENSLBEP00000019752	ENSLBEP00000005885	Uncharacterized protein.	Uncharacterized protein.	0.652
ENSLBEP00000019752	ENSLBEP00000019719	ENSLBEP00000019752	ENSLBEP00000019719	Uncharacterized protein.	Protein kinase domain-containing protein.	0.899
ENSLBEP00000019752	ENSLBEP00000034506	ENSLBEP00000019752	ENSLBEP00000034506	Uncharacterized protein.	Protein kinase domain-containing protein.	0.884
ENSLBEP00000019752	ENSLBEP00000037592	ENSLBEP00000019752	ENSLBEP00000037592	Uncharacterized protein.	Protein kinase domain-containing protein.	0.817
ENSLBEP00000019752	LOC109980924	ENSLBEP00000019752	ENSLBEP00000010939	Uncharacterized protein.	Uncharacterized protein.	0.652