(15 nodes) O-glycosylation of TSR domain-containing proteins network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	THSD4	Thrombospondin type 1 domain containing 4. (984 aa)
	LOC109984748	Beta 3-glucosyltransferase a. (411 aa)
	spon1	Spondin 1a. (804 aa)
	b3glct	Beta 3-glucosyltransferase b. (461 aa)
	ENSLBEP00000004428	PLAC domain-containing protein. (233 aa)
	ENSLBEP00000004449	ADAM_spacer1 domain-containing protein. (194 aa)
	adamts15	ADAM metallopeptidase with thrombospondin type 1 motif, 15b. (954 aa)
	LOC110000964	Reelin domain-containing protein. (154 aa)
	LOC109993519	Spondin 2a, extracellular matrix protein. (333 aa)
	spon2	Spondin 2b, extracellular matrix protein. (401 aa)
	ENSLBEP00000024641	Uncharacterized protein. (477 aa)
	ENSLBEP00000026477	Uncharacterized protein. (737 aa)
	ENSLBEP00000026551	Uncharacterized protein. (219 aa)
	adamtsl5	ADAMTS like 5. (561 aa)
	LOC109992762	Uncharacterized protein. (747 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000004428	ENSLBEP00000004449	ENSLBEP00000004428	ENSLBEP00000004449	PLAC domain-containing protein.	ADAM_spacer1 domain-containing protein.	0.586
ENSLBEP00000004428	LOC109984748	ENSLBEP00000004428	ENSLBEP00000002406	PLAC domain-containing protein.	Beta 3-glucosyltransferase a.	0.601
ENSLBEP00000004428	LOC109992762	ENSLBEP00000004428	ENSLBEP00000038609	PLAC domain-containing protein.	Uncharacterized protein.	0.442
ENSLBEP00000004428	LOC110000964	ENSLBEP00000004428	ENSLBEP00000004942	PLAC domain-containing protein.	Reelin domain-containing protein.	0.442
ENSLBEP00000004428	adamtsl5	ENSLBEP00000004428	ENSLBEP00000034595	PLAC domain-containing protein.	ADAMTS like 5.	0.573
ENSLBEP00000004428	b3glct	ENSLBEP00000004428	ENSLBEP00000003565	PLAC domain-containing protein.	Beta 3-glucosyltransferase b.	0.601
ENSLBEP00000004428	spon1	ENSLBEP00000004428	ENSLBEP00000003220	PLAC domain-containing protein.	Spondin 1a.	0.442
ENSLBEP00000004449	ENSLBEP00000004428	ENSLBEP00000004449	ENSLBEP00000004428	ADAM_spacer1 domain-containing protein.	PLAC domain-containing protein.	0.586
ENSLBEP00000004449	LOC109984748	ENSLBEP00000004449	ENSLBEP00000002406	ADAM_spacer1 domain-containing protein.	Beta 3-glucosyltransferase a.	0.601
ENSLBEP00000004449	LOC109992762	ENSLBEP00000004449	ENSLBEP00000038609	ADAM_spacer1 domain-containing protein.	Uncharacterized protein.	0.442
ENSLBEP00000004449	LOC110000964	ENSLBEP00000004449	ENSLBEP00000004942	ADAM_spacer1 domain-containing protein.	Reelin domain-containing protein.	0.442
ENSLBEP00000004449	b3glct	ENSLBEP00000004449	ENSLBEP00000003565	ADAM_spacer1 domain-containing protein.	Beta 3-glucosyltransferase b.	0.601
ENSLBEP00000004449	spon1	ENSLBEP00000004449	ENSLBEP00000003220	ADAM_spacer1 domain-containing protein.	Spondin 1a.	0.442
ENSLBEP00000024641	ENSLBEP00000026551	ENSLBEP00000024641	ENSLBEP00000026551	Uncharacterized protein.	Uncharacterized protein.	0.732
ENSLBEP00000024641	LOC109984748	ENSLBEP00000024641	ENSLBEP00000002406	Uncharacterized protein.	Beta 3-glucosyltransferase a.	0.620
ENSLBEP00000024641	LOC109993519	ENSLBEP00000024641	ENSLBEP00000006630	Uncharacterized protein.	Spondin 2a, extracellular matrix protein.	0.410
ENSLBEP00000024641	adamtsl5	ENSLBEP00000024641	ENSLBEP00000034595	Uncharacterized protein.	ADAMTS like 5.	0.413
ENSLBEP00000024641	b3glct	ENSLBEP00000024641	ENSLBEP00000003565	Uncharacterized protein.	Beta 3-glucosyltransferase b.	0.620
ENSLBEP00000024641	spon2	ENSLBEP00000024641	ENSLBEP00000008536	Uncharacterized protein.	Spondin 2b, extracellular matrix protein.	0.412
ENSLBEP00000026477	ENSLBEP00000026551	ENSLBEP00000026477	ENSLBEP00000026551	Uncharacterized protein.	Uncharacterized protein.	0.899