(31 nodes) TNFR/NGFR cysteine-rich region, and Tumour necrosis factor domain network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109998562	TNF superfamily member 13b; Belongs to the tumor necrosis factor family. (260 aa)
	ENSLBEP00000007839	TNFR-Cys domain-containing protein. (273 aa)
	ENSLBEP00000007902	TNFR-Cys domain-containing protein. (305 aa)
	LOC110004385	TNFR-Cys domain-containing protein. (165 aa)
	ENSLBEP00000008609	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator. (402 aa)
	ENSLBEP00000012259	TNFR-Cys domain-containing protein. (265 aa)
	ENSLBEP00000012316	TNFR-Cys domain-containing protein. (296 aa)
	ENSLBEP00000012344	TNFR-Cys domain-containing protein. (265 aa)
	cd40lg	CD40 ligand; Belongs to the tumor necrosis factor family. (238 aa)
	LOC109987883	TNFR-Cys domain-containing protein. (327 aa)
	ENSLBEP00000015425	TNFR-Cys domain-containing protein. (165 aa)
	LOC109996990	CD40 molecule, TNF receptor superfamily member 5. (308 aa)
	LOC109995405	Uncharacterized protein. (333 aa)
	LOC109989552	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (282 aa)
	ENSLBEP00000017170	TNFR-Cys domain-containing protein. (202 aa)
	LOC110004603	Uncharacterized protein. (300 aa)
	LOC110006283	TNFR-Cys domain-containing protein. (284 aa)
	LOC110004603-2	Uncharacterized protein. (288 aa)
	LOC109994830	Uncharacterized protein. (227 aa)
	LOC109981531	TNFR-Cys domain-containing protein. (241 aa)
	LOC109981508	Uncharacterized protein. (280 aa)
	traf3	TNF receptor-associated factor 3. (666 aa)
	LOC109986980	TNF superfamily member 11; Belongs to the tumor necrosis factor family. (268 aa)
	TNFRSF11B	TNF receptor superfamily member 11b. (414 aa)
	LOC109984427	Uncharacterized protein. (287 aa)
	LOC109997856	Mitogen-activated protein kinase kinase kinase 14a. (855 aa)
	LOC109989247	TNF superfamily member 14; Belongs to the tumor necrosis factor family. (237 aa)
	ENSLBEP00000033040	Ig-like domain-containing protein. (224 aa)
	btla	Ig-like domain-containing protein. (310 aa)
	LOC109995681	Uncharacterized protein. (307 aa)
	tnfsf12	TNF superfamily member 12; Belongs to the tumor necrosis factor family. (246 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000007839	ENSLBEP00000012259	ENSLBEP00000007839	ENSLBEP00000012259	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.492
ENSLBEP00000007839	ENSLBEP00000012316	ENSLBEP00000007839	ENSLBEP00000012316	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.487
ENSLBEP00000007839	ENSLBEP00000012344	ENSLBEP00000007839	ENSLBEP00000012344	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.480
ENSLBEP00000007839	LOC109981508	ENSLBEP00000007839	ENSLBEP00000021874	TNFR-Cys domain-containing protein.	Uncharacterized protein.	0.483
ENSLBEP00000007839	LOC109981531	ENSLBEP00000007839	ENSLBEP00000021822	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.479
ENSLBEP00000007839	LOC110004385	ENSLBEP00000007839	ENSLBEP00000007924	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.450
ENSLBEP00000007839	LOC110006283	ENSLBEP00000007839	ENSLBEP00000017834	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.476
ENSLBEP00000007902	ENSLBEP00000012259	ENSLBEP00000007902	ENSLBEP00000012259	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.483
ENSLBEP00000007902	ENSLBEP00000012316	ENSLBEP00000007902	ENSLBEP00000012316	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.484
ENSLBEP00000007902	ENSLBEP00000012344	ENSLBEP00000007902	ENSLBEP00000012344	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.481
ENSLBEP00000007902	LOC109981508	ENSLBEP00000007902	ENSLBEP00000021874	TNFR-Cys domain-containing protein.	Uncharacterized protein.	0.490
ENSLBEP00000007902	LOC109981531	ENSLBEP00000007902	ENSLBEP00000021822	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.488
ENSLBEP00000007902	LOC109994830	ENSLBEP00000007902	ENSLBEP00000021217	TNFR-Cys domain-containing protein.	Uncharacterized protein.	0.434
ENSLBEP00000007902	LOC109996990	ENSLBEP00000007902	ENSLBEP00000016101	TNFR-Cys domain-containing protein.	CD40 molecule, TNF receptor superfamily member 5.	0.480
ENSLBEP00000007902	LOC110004385	ENSLBEP00000007902	ENSLBEP00000007924	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.485
ENSLBEP00000007902	LOC110004603	ENSLBEP00000007902	ENSLBEP00000017779	TNFR-Cys domain-containing protein.	Uncharacterized protein.	0.438
ENSLBEP00000007902	LOC110004603-2	ENSLBEP00000007902	ENSLBEP00000017847	TNFR-Cys domain-containing protein.	Uncharacterized protein.	0.436
ENSLBEP00000007902	LOC110006283	ENSLBEP00000007902	ENSLBEP00000017834	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.491
ENSLBEP00000008609	ENSLBEP00000012259	ENSLBEP00000008609	ENSLBEP00000012259	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	TNFR-Cys domain-containing protein.	0.586
ENSLBEP00000008609	ENSLBEP00000012316	ENSLBEP00000008609	ENSLBEP00000012316	Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.	TNFR-Cys domain-containing protein.	0.586