(43 nodes) Mixed, incl. UBX domain, and Josephin domain DUBs network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pex1	Peroxisomal biogenesis factor 1. (1250 aa)
	UBQLN4	Ubiquilin 4. (630 aa)
	ubxn1	UBX domain protein 1. (362 aa)
	spata5l1	Spermatogenesis associated 5-like 1. (747 aa)
	LOC109992891	Growth arrest-specific 7a. (344 aa)
	ubxn6	UBX domain protein 6. (439 aa)
	ENSLBEP00000007340	Uncharacterized protein. (53 aa)
	ENSLBEP00000007363	Uncharacterized protein. (79 aa)
	ENSLBEP00000007465	Ubiquitin-like domain-containing protein. (78 aa)
	yod1	YOD1 deubiquitinase. (301 aa)
	zfand4	Zinc finger, AN1-type domain 4. (735 aa)
	ubxn11	UBX domain protein 11. (481 aa)
	faap100	Si:dkey-57h18.1. (793 aa)
	aspscr1	ASPSCR1 tether for SLC2A4, UBX domain containing. (618 aa)
	ubl7	Ubiquitin-like 7b (bone marrow stromal cell-derived). (382 aa)
	ENSLBEP00000015420	annotation not available (79 aa)
	LOC110004984	Uncharacterized protein; Belongs to the AAA ATPase family. (611 aa)
	LOC110000612	RAD23 homolog A, nucleotide excision repair protein b. (480 aa)
	SPATA5	Spermatogenesis associated 5. (811 aa)
	nvl	Nuclear VCP like. (897 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (674 aa)
	ENSLBEP00000020798	UBX domain protein 4. (110 aa)
	LOC109992065	UBA domain-containing protein. (211 aa)
	svip	Si:ch73-147o17.1. (80 aa)
	SPAST	Spastin; Belongs to the AAA ATPase family. (462 aa)
	LOC110000677	Zgc:136908; Belongs to the AAA ATPase family. (802 aa)
	LOC109976023	Uncharacterized protein. (368 aa)
	ubxn7	UBX domain protein 7. (545 aa)
	LOC110005321	Plac8 onzin related protein 2. (129 aa)
	nsfl1c	NSFL1 (p97) cofactor (p47). (377 aa)
	ENSLBEP00000027417	Ataxin 3. (221 aa)
	plaa	Phospholipase A2-activating protein. (798 aa)
	ube4b	Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae). (1218 aa)
	LOC109983339	Lysine (K)-specific demethylase 2Ba. (780 aa)
	fignl1	Fidgetin-like 1; Belongs to the AAA ATPase family. (647 aa)
	faf2	Fas associated factor family member 2. (445 aa)
	LOC110000785	Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...] (553 aa)
	ubxn2a	UBX domain protein 2A. (246 aa)
	ufd1	Ubiquitin recognition factor in ER associated degradation 1. (276 aa)
	ube4a	Ubiquitination factor E4A (UFD2 homolog, yeast). (1075 aa)
	ngly1	N-glycanase 1. (632 aa)
	LOC110001522	Valosin containing protein (p97)/p47 complex interacting protein 1. (1140 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000007340	LOC110000677	ENSLBEP00000007340	ENSLBEP00000023113	Uncharacterized protein.	Zgc:136908; Belongs to the AAA ATPase family.	0.952
ENSLBEP00000007340	LOC110000785	ENSLBEP00000007340	ENSLBEP00000031132	Uncharacterized protein.	Spastin; ATP-dependent microtubule severing protein that specifically recognizes and cuts microtubules that are polyglutamylated. Preferentially recognizes and acts on microtubules decorated with short polyglutamate tails: severing activity increases as the number of glutamates per tubulin rises from one to eight, but decreases beyond this glutamylation threshold. Microtubule severing promotes reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Go [...]	0.664
ENSLBEP00000007340	LOC110004984	ENSLBEP00000007340	ENSLBEP00000015713	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.832
ENSLBEP00000007340	SPAST	ENSLBEP00000007340	ENSLBEP00000022881	Uncharacterized protein.	Spastin; Belongs to the AAA ATPase family.	0.664
ENSLBEP00000007340	SPATA5	ENSLBEP00000007340	ENSLBEP00000019225	Uncharacterized protein.	Spermatogenesis associated 5.	0.832
ENSLBEP00000007340	UBQLN4	ENSLBEP00000007340	ENSLBEP00000002986	Uncharacterized protein.	Ubiquilin 4.	0.454
ENSLBEP00000007340	aspscr1	ENSLBEP00000007340	ENSLBEP00000012224	Uncharacterized protein.	ASPSCR1 tether for SLC2A4, UBX domain containing.	0.926
ENSLBEP00000007340	faf1	ENSLBEP00000007340	ENSLBEP00000019667	Uncharacterized protein.	Fas (TNFRSF6) associated factor 1.	0.742
ENSLBEP00000007340	faf2	ENSLBEP00000007340	ENSLBEP00000030513	Uncharacterized protein.	Fas associated factor family member 2.	0.757
ENSLBEP00000007340	fignl1	ENSLBEP00000007340	ENSLBEP00000030462	Uncharacterized protein.	Fidgetin-like 1; Belongs to the AAA ATPase family.	0.664
ENSLBEP00000007340	nsfl1c	ENSLBEP00000007340	ENSLBEP00000027133	Uncharacterized protein.	NSFL1 (p97) cofactor (p47).	0.889
ENSLBEP00000007340	nvl	ENSLBEP00000007340	ENSLBEP00000019302	Uncharacterized protein.	Nuclear VCP like.	0.696
ENSLBEP00000007340	pex1	ENSLBEP00000007340	ENSLBEP00000001704	Uncharacterized protein.	Peroxisomal biogenesis factor 1.	0.639
ENSLBEP00000007340	spata5l1	ENSLBEP00000007340	ENSLBEP00000006457	Uncharacterized protein.	Spermatogenesis associated 5-like 1.	0.832
ENSLBEP00000007340	svip	ENSLBEP00000007340	ENSLBEP00000022215	Uncharacterized protein.	Si:ch73-147o17.1.	0.821
ENSLBEP00000007340	ube4a	ENSLBEP00000007340	ENSLBEP00000035138	Uncharacterized protein.	Ubiquitination factor E4A (UFD2 homolog, yeast).	0.695
ENSLBEP00000007340	ube4b	ENSLBEP00000007340	ENSLBEP00000028470	Uncharacterized protein.	Ubiquitination factor E4B, UFD2 homolog (S. cerevisiae).	0.633
ENSLBEP00000007340	ubxn1	ENSLBEP00000007340	ENSLBEP00000005793	Uncharacterized protein.	UBX domain protein 1.	0.853
ENSLBEP00000007340	ubxn11	ENSLBEP00000007340	ENSLBEP00000008817	Uncharacterized protein.	UBX domain protein 11.	0.733
ENSLBEP00000007340	ubxn2a	ENSLBEP00000007340	ENSLBEP00000032636	Uncharacterized protein.	UBX domain protein 2A.	0.867