(23 nodes) Mixed, incl. UBX domain, and Preribosome binding network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubxn1	UBX domain protein 1. (362 aa)
	spata5l1	Spermatogenesis associated 5-like 1. (747 aa)
	ubxn6	UBX domain protein 6. (439 aa)
	ENSLBEP00000007363	Uncharacterized protein. (79 aa)
	yod1	YOD1 deubiquitinase. (301 aa)
	ubxn11	UBX domain protein 11. (481 aa)
	faap100	Si:dkey-57h18.1. (793 aa)
	aspscr1	ASPSCR1 tether for SLC2A4, UBX domain containing. (618 aa)
	ENSLBEP00000015420	annotation not available (79 aa)
	SPATA5	Spermatogenesis associated 5. (811 aa)
	nvl	Nuclear VCP like. (897 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (674 aa)
	ENSLBEP00000020798	UBX domain protein 4. (110 aa)
	svip	Si:ch73-147o17.1. (80 aa)
	LOC110000677	Zgc:136908; Belongs to the AAA ATPase family. (802 aa)
	ubxn7	UBX domain protein 7. (545 aa)
	nsfl1c	NSFL1 (p97) cofactor (p47). (377 aa)
	plaa	Phospholipase A2-activating protein. (798 aa)
	faf2	Fas associated factor family member 2. (445 aa)
	ubxn2a	UBX domain protein 2A. (246 aa)
	ufd1	Ubiquitin recognition factor in ER associated degradation 1. (276 aa)
	LOC110001522	Valosin containing protein (p97)/p47 complex interacting protein 1. (1140 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000007363	LOC110000677	ENSLBEP00000007363	ENSLBEP00000023113	Uncharacterized protein.	Zgc:136908; Belongs to the AAA ATPase family.	0.952
ENSLBEP00000007363	SPATA5	ENSLBEP00000007363	ENSLBEP00000019225	Uncharacterized protein.	Spermatogenesis associated 5.	0.832
ENSLBEP00000007363	aspscr1	ENSLBEP00000007363	ENSLBEP00000012224	Uncharacterized protein.	ASPSCR1 tether for SLC2A4, UBX domain containing.	0.926
ENSLBEP00000007363	faf1	ENSLBEP00000007363	ENSLBEP00000019667	Uncharacterized protein.	Fas (TNFRSF6) associated factor 1.	0.742
ENSLBEP00000007363	faf2	ENSLBEP00000007363	ENSLBEP00000030513	Uncharacterized protein.	Fas associated factor family member 2.	0.757
ENSLBEP00000007363	nsfl1c	ENSLBEP00000007363	ENSLBEP00000027133	Uncharacterized protein.	NSFL1 (p97) cofactor (p47).	0.889
ENSLBEP00000007363	nvl	ENSLBEP00000007363	ENSLBEP00000019302	Uncharacterized protein.	Nuclear VCP like.	0.696
ENSLBEP00000007363	spata5l1	ENSLBEP00000007363	ENSLBEP00000006457	Uncharacterized protein.	Spermatogenesis associated 5-like 1.	0.832
ENSLBEP00000007363	svip	ENSLBEP00000007363	ENSLBEP00000022215	Uncharacterized protein.	Si:ch73-147o17.1.	0.821
ENSLBEP00000007363	ubxn1	ENSLBEP00000007363	ENSLBEP00000005793	Uncharacterized protein.	UBX domain protein 1.	0.853
ENSLBEP00000007363	ubxn11	ENSLBEP00000007363	ENSLBEP00000008817	Uncharacterized protein.	UBX domain protein 11.	0.733
ENSLBEP00000007363	ubxn2a	ENSLBEP00000007363	ENSLBEP00000032636	Uncharacterized protein.	UBX domain protein 2A.	0.867
ENSLBEP00000007363	ubxn6	ENSLBEP00000007363	ENSLBEP00000007277	Uncharacterized protein.	UBX domain protein 6.	0.985
ENSLBEP00000007363	ubxn7	ENSLBEP00000007363	ENSLBEP00000024479	Uncharacterized protein.	UBX domain protein 7.	0.424
ENSLBEP00000007363	vcp	ENSLBEP00000007363	ENSLBEP00000019661	Uncharacterized protein.	Valosin containing protein; Belongs to the AAA ATPase family.	0.952
ENSLBEP00000015420	LOC110000677	ENSLBEP00000015420	ENSLBEP00000023113	annotation not available	Zgc:136908; Belongs to the AAA ATPase family.	0.952
ENSLBEP00000015420	SPATA5	ENSLBEP00000015420	ENSLBEP00000019225	annotation not available	Spermatogenesis associated 5.	0.832
ENSLBEP00000015420	aspscr1	ENSLBEP00000015420	ENSLBEP00000012224	annotation not available	ASPSCR1 tether for SLC2A4, UBX domain containing.	0.926
ENSLBEP00000015420	faf1	ENSLBEP00000015420	ENSLBEP00000019667	annotation not available	Fas (TNFRSF6) associated factor 1.	0.742
ENSLBEP00000015420	faf2	ENSLBEP00000015420	ENSLBEP00000030513	annotation not available	Fas associated factor family member 2.	0.757