(10 nodes) ATPase regulator activity, and Outer mitochondrial membrane organization network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109975394	Heat shock protein 4 like. (731 aa)
	bag3	BCL2 associated athanogene 3. (542 aa)
	bag2	BCL2 associated athanogene 2. (207 aa)
	hspa12b	Heat shock protein 12B. (652 aa)
	LOC109987292	Heat shock protein 4a. (838 aa)
	hspa13	Heat shock protein 70 family, member 13. (439 aa)
	bag4	BCL2 associated athanogene 4. (388 aa)
	LOC109999624	Uncharacterized protein; Belongs to the heat shock protein 70 family. (638 aa)
	hspbp1	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1. (334 aa)
	LOC109994523	Heat shock protein 4b. (845 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109975394	LOC109987292	ENSLBEP00000001201	ENSLBEP00000023425	Heat shock protein 4 like.	Heat shock protein 4a.	0.484
LOC109975394	LOC109994523	ENSLBEP00000001201	ENSLBEP00000035750	Heat shock protein 4 like.	Heat shock protein 4b.	0.484
LOC109975394	LOC109999624	ENSLBEP00000001201	ENSLBEP00000030955	Heat shock protein 4 like.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.858
LOC109975394	bag2	ENSLBEP00000001201	ENSLBEP00000017110	Heat shock protein 4 like.	BCL2 associated athanogene 2.	0.951
LOC109975394	bag3	ENSLBEP00000001201	ENSLBEP00000016601	Heat shock protein 4 like.	BCL2 associated athanogene 3.	0.938
LOC109975394	bag4	ENSLBEP00000001201	ENSLBEP00000029497	Heat shock protein 4 like.	BCL2 associated athanogene 4.	0.872
LOC109975394	hspa12b	ENSLBEP00000001201	ENSLBEP00000022240	Heat shock protein 4 like.	Heat shock protein 12B.	0.830
LOC109975394	hspa13	ENSLBEP00000001201	ENSLBEP00000024326	Heat shock protein 4 like.	Heat shock protein 70 family, member 13.	0.841
LOC109975394	hspbp1	ENSLBEP00000001201	ENSLBEP00000031392	Heat shock protein 4 like.	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1.	0.949
LOC109987292	LOC109975394	ENSLBEP00000023425	ENSLBEP00000001201	Heat shock protein 4a.	Heat shock protein 4 like.	0.484
LOC109987292	LOC109994523	ENSLBEP00000023425	ENSLBEP00000035750	Heat shock protein 4a.	Heat shock protein 4b.	0.840
LOC109987292	LOC109999624	ENSLBEP00000023425	ENSLBEP00000030955	Heat shock protein 4a.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.869
LOC109987292	bag2	ENSLBEP00000023425	ENSLBEP00000017110	Heat shock protein 4a.	BCL2 associated athanogene 2.	0.958
LOC109987292	bag3	ENSLBEP00000023425	ENSLBEP00000016601	Heat shock protein 4a.	BCL2 associated athanogene 3.	0.961
LOC109987292	bag4	ENSLBEP00000023425	ENSLBEP00000029497	Heat shock protein 4a.	BCL2 associated athanogene 4.	0.886
LOC109987292	hspa12b	ENSLBEP00000023425	ENSLBEP00000022240	Heat shock protein 4a.	Heat shock protein 12B.	0.822
LOC109987292	hspa13	ENSLBEP00000023425	ENSLBEP00000024326	Heat shock protein 4a.	Heat shock protein 70 family, member 13.	0.858
LOC109987292	hspbp1	ENSLBEP00000023425	ENSLBEP00000031392	Heat shock protein 4a.	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1.	0.964
LOC109994523	LOC109975394	ENSLBEP00000035750	ENSLBEP00000001201	Heat shock protein 4b.	Heat shock protein 4 like.	0.484
LOC109994523	LOC109987292	ENSLBEP00000035750	ENSLBEP00000023425	Heat shock protein 4b.	Heat shock protein 4a.	0.840