23 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PAK3	Non-specific serine/threonine protein kinase. (574 aa)
	LOC109980209	Uncharacterized protein. (577 aa)
	LOC109999324	Rho guanine nucleotide exchange factor (GEF) 7b. (651 aa)
	LOC109996947	Rac family small GTPase 3b. (192 aa)
	pak1	Non-specific serine/threonine protein kinase. (576 aa)
	arhgef6	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6. (773 aa)
	pak2	Non-specific serine/threonine protein kinase. (530 aa)
	LOC109994148	Cell division cycle 42. (191 aa)
	pak4	Non-specific serine/threonine protein kinase. (658 aa)
	CDC42	Cell division cycle 42. (203 aa)
	LOC109995395	Uncharacterized protein. (191 aa)
	LOC109978465	Serine/threonine-protein kinase PAK 2. (530 aa)
	LOC110003032	Non-specific serine/threonine protein kinase. (604 aa)
	arhgef7	Rho guanine nucleotide exchange factor (GEF) 7a. (799 aa)
	arhgap1	Uncharacterized protein. (430 aa)
	nck2	Cytoplasmic protein. (411 aa)
	nck1	Cytoplasmic protein. (393 aa)
	iqgap2	IQ motif containing GTPase activating protein 2. (1500 aa)
	LOC110003296	Uncharacterized protein. (138 aa)
	pak5	Non-specific serine/threonine protein kinase. (741 aa)
	RAC1-2	Rac family small GTPase 1. (192 aa)
	LOC109981383	Non-specific serine/threonine protein kinase. (696 aa)
	PAK2	Non-specific serine/threonine protein kinase. (510 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	LOC109978465	ENSLBEP00000014221	ENSLBEP00000021345	Cell division cycle 42.	Serine/threonine-protein kinase PAK 2.	0.949
CDC42	LOC109980209	ENSLBEP00000014221	ENSLBEP00000009610	Cell division cycle 42.	Uncharacterized protein.	0.820
CDC42	LOC109981383	ENSLBEP00000014221	ENSLBEP00000034309	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.965
CDC42	LOC109995395	ENSLBEP00000014221	ENSLBEP00000015957	Cell division cycle 42.	Uncharacterized protein.	0.815
CDC42	LOC109996947	ENSLBEP00000014221	ENSLBEP00000011696	Cell division cycle 42.	Rac family small GTPase 3b.	0.784
CDC42	LOC109999324	ENSLBEP00000014221	ENSLBEP00000010106	Cell division cycle 42.	Rho guanine nucleotide exchange factor (GEF) 7b.	0.820
CDC42	LOC110003032	ENSLBEP00000014221	ENSLBEP00000023096	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.965
CDC42	LOC110003296	ENSLBEP00000014221	ENSLBEP00000030398	Cell division cycle 42.	Uncharacterized protein.	0.816
CDC42	PAK2	ENSLBEP00000014221	ENSLBEP00000037898	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.953
CDC42	PAK3	ENSLBEP00000014221	ENSLBEP00000003730	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.979
CDC42	RAC1-2	ENSLBEP00000014221	ENSLBEP00000033843	Cell division cycle 42.	Rac family small GTPase 1.	0.784
CDC42	arhgap1	ENSLBEP00000014221	ENSLBEP00000025208	Cell division cycle 42.	Uncharacterized protein.	0.981
CDC42	arhgef6	ENSLBEP00000014221	ENSLBEP00000013111	Cell division cycle 42.	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6.	0.820
CDC42	arhgef7	ENSLBEP00000014221	ENSLBEP00000024264	Cell division cycle 42.	Rho guanine nucleotide exchange factor (GEF) 7a.	0.820
CDC42	iqgap2	ENSLBEP00000014221	ENSLBEP00000028949	Cell division cycle 42.	IQ motif containing GTPase activating protein 2.	0.960
CDC42	nck1	ENSLBEP00000014221	ENSLBEP00000025960	Cell division cycle 42.	Cytoplasmic protein.	0.728
CDC42	nck2	ENSLBEP00000014221	ENSLBEP00000025887	Cell division cycle 42.	Cytoplasmic protein.	0.728
CDC42	pak1	ENSLBEP00000014221	ENSLBEP00000012945	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.979
CDC42	pak2	ENSLBEP00000014221	ENSLBEP00000013620	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.949
CDC42	pak4	ENSLBEP00000014221	ENSLBEP00000014035	Cell division cycle 42.	Non-specific serine/threonine protein kinase.	0.968