17 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109981438	Rho GTPase activating protein 35b. (1529 aa)
	rnd3	Rho family GTPase 3a. (243 aa)
	arhgap5	Rho GTPase activating protein 5. (1488 aa)
	pkn2	Protein kinase N2. (899 aa)
	LOC109993560	Uncharacterized protein. (202 aa)
	LOC109984918	Uncharacterized protein. (205 aa)
	pkn1	Protein kinase N1a. (921 aa)
	NET1	Uncharacterized protein. (577 aa)
	LOC109981514	Uncharacterized protein. (193 aa)
	LOC110000079	Rho GTPase activating protein 36. (646 aa)
	LOC110002593	Uncharacterized protein. (251 aa)
	ENSLBEP00000025988	Rho-GAP domain-containing protein. (181 aa)
	LOC109981150	Ras homolog family member F. (207 aa)
	RHOB	Ras homolog family member B. (141 aa)
	arhgap35	Uncharacterized protein. (1525 aa)
	arhgef3	Rho guanine nucleotide exchange factor (GEF) 3. (486 aa)
	LOC109979717	DUF3498 domain-containing protein. (464 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000025988	LOC109979717	ENSLBEP00000025988	ENSLBEP00000038746	Rho-GAP domain-containing protein.	DUF3498 domain-containing protein.	0.674
ENSLBEP00000025988	LOC109981150	ENSLBEP00000025988	ENSLBEP00000026508	Rho-GAP domain-containing protein.	Ras homolog family member F.	0.804
ENSLBEP00000025988	LOC109981514	ENSLBEP00000025988	ENSLBEP00000020602	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.862
ENSLBEP00000025988	LOC109984918	ENSLBEP00000025988	ENSLBEP00000012644	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.862
ENSLBEP00000025988	LOC109993560	ENSLBEP00000025988	ENSLBEP00000010992	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.862
ENSLBEP00000025988	LOC110002593	ENSLBEP00000025988	ENSLBEP00000025902	Rho-GAP domain-containing protein.	Uncharacterized protein.	0.674
ENSLBEP00000025988	RHOB	ENSLBEP00000025988	ENSLBEP00000026886	Rho-GAP domain-containing protein.	Ras homolog family member B.	0.862
ENSLBEP00000025988	rnd3	ENSLBEP00000025988	ENSLBEP00000005945	Rho-GAP domain-containing protein.	Rho family GTPase 3a.	0.803
LOC109979717	ENSLBEP00000025988	ENSLBEP00000038746	ENSLBEP00000025988	DUF3498 domain-containing protein.	Rho-GAP domain-containing protein.	0.674
LOC109979717	LOC109981150	ENSLBEP00000038746	ENSLBEP00000026508	DUF3498 domain-containing protein.	Ras homolog family member F.	0.506
LOC109979717	LOC109981438	ENSLBEP00000038746	ENSLBEP00000004506	DUF3498 domain-containing protein.	Rho GTPase activating protein 35b.	0.674
LOC109979717	LOC109981514	ENSLBEP00000038746	ENSLBEP00000020602	DUF3498 domain-containing protein.	Uncharacterized protein.	0.506
LOC109979717	LOC109984918	ENSLBEP00000038746	ENSLBEP00000012644	DUF3498 domain-containing protein.	Uncharacterized protein.	0.506
LOC109979717	LOC109993560	ENSLBEP00000038746	ENSLBEP00000010992	DUF3498 domain-containing protein.	Uncharacterized protein.	0.506
LOC109979717	LOC110002593	ENSLBEP00000038746	ENSLBEP00000025902	DUF3498 domain-containing protein.	Uncharacterized protein.	0.443
LOC109979717	RHOB	ENSLBEP00000038746	ENSLBEP00000026886	DUF3498 domain-containing protein.	Ras homolog family member B.	0.506
LOC109979717	arhgap35	ENSLBEP00000038746	ENSLBEP00000034939	DUF3498 domain-containing protein.	Uncharacterized protein.	0.674
LOC109979717	arhgap5	ENSLBEP00000038746	ENSLBEP00000007165	DUF3498 domain-containing protein.	Rho GTPase activating protein 5.	0.674
LOC109979717	rnd3	ENSLBEP00000038746	ENSLBEP00000005945	DUF3498 domain-containing protein.	Rho family GTPase 3a.	0.534
LOC109981150	ENSLBEP00000025988	ENSLBEP00000026508	ENSLBEP00000025988	Ras homolog family member F.	Rho-GAP domain-containing protein.	0.804