(6 nodes) Mixed, incl. CD3 protein, epsilon/gamma/delta subunit, and Membrane raft localization network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLBEP00000016708	Uncharacterized protein. (158 aa)
	cd3e	Ig_4 domain-containing protein. (175 aa)
	lck	Tyrosine-protein kinase. (499 aa)
	LOC109975245	Uncharacterized protein. (141 aa)
	LOC109994563	Ig-like domain-containing protein. (214 aa)
	ptprc	Protein tyrosine phosphatase receptor type C. (1151 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000016708	LOC109975245	ENSLBEP00000016708	ENSLBEP00000024450	Uncharacterized protein.	Uncharacterized protein.	0.997
ENSLBEP00000016708	LOC109994563	ENSLBEP00000016708	ENSLBEP00000036345	Uncharacterized protein.	Ig-like domain-containing protein.	0.975
ENSLBEP00000016708	cd3e	ENSLBEP00000016708	ENSLBEP00000016724	Uncharacterized protein.	Ig_4 domain-containing protein.	0.999
ENSLBEP00000016708	lck	ENSLBEP00000016708	ENSLBEP00000017850	Uncharacterized protein.	Tyrosine-protein kinase.	0.632
ENSLBEP00000016708	ptprc	ENSLBEP00000016708	ENSLBEP00000036424	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.837
LOC109975245	ENSLBEP00000016708	ENSLBEP00000024450	ENSLBEP00000016708	Uncharacterized protein.	Uncharacterized protein.	0.997
LOC109975245	LOC109994563	ENSLBEP00000024450	ENSLBEP00000036345	Uncharacterized protein.	Ig-like domain-containing protein.	0.967
LOC109975245	cd3e	ENSLBEP00000024450	ENSLBEP00000016724	Uncharacterized protein.	Ig_4 domain-containing protein.	0.998
LOC109975245	lck	ENSLBEP00000024450	ENSLBEP00000017850	Uncharacterized protein.	Tyrosine-protein kinase.	0.692
LOC109975245	ptprc	ENSLBEP00000024450	ENSLBEP00000036424	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.741
LOC109994563	ENSLBEP00000016708	ENSLBEP00000036345	ENSLBEP00000016708	Ig-like domain-containing protein.	Uncharacterized protein.	0.975
LOC109994563	LOC109975245	ENSLBEP00000036345	ENSLBEP00000024450	Ig-like domain-containing protein.	Uncharacterized protein.	0.967
LOC109994563	cd3e	ENSLBEP00000036345	ENSLBEP00000016724	Ig-like domain-containing protein.	Ig_4 domain-containing protein.	0.974
LOC109994563	lck	ENSLBEP00000036345	ENSLBEP00000017850	Ig-like domain-containing protein.	Tyrosine-protein kinase.	0.890
LOC109994563	ptprc	ENSLBEP00000036345	ENSLBEP00000036424	Ig-like domain-containing protein.	Protein tyrosine phosphatase receptor type C.	0.692
cd3e	ENSLBEP00000016708	ENSLBEP00000016724	ENSLBEP00000016708	Ig_4 domain-containing protein.	Uncharacterized protein.	0.999
cd3e	LOC109975245	ENSLBEP00000016724	ENSLBEP00000024450	Ig_4 domain-containing protein.	Uncharacterized protein.	0.998
cd3e	LOC109994563	ENSLBEP00000016724	ENSLBEP00000036345	Ig_4 domain-containing protein.	Ig-like domain-containing protein.	0.974
cd3e	lck	ENSLBEP00000016724	ENSLBEP00000017850	Ig_4 domain-containing protein.	Tyrosine-protein kinase.	0.706
cd3e	ptprc	ENSLBEP00000016724	ENSLBEP00000036424	Ig_4 domain-containing protein.	Protein tyrosine phosphatase receptor type C.	0.860