(10 nodes) Mixed, incl. TNF receptor-associated factor TRAF, metazoa, and Tumor necrosis factor receptor activity network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109995112	TNF receptor-associated factor. (492 aa)
	tab3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (609 aa)
	ENSLBEP00000008892	Uncharacterized protein. (305 aa)
	LOC109989501	Protein kinase domain-containing protein. (505 aa)
	LOC109998212	Baculoviral IAP repeat containing 2. (656 aa)
	ripk1	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like. (683 aa)
	LOC109996590	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (519 aa)
	LOC109982881	Uncharacterized protein. (396 aa)
	tradd	Tnfrsf1a-associated via death domain. (291 aa)
	LOC109990925	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (568 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000008892	LOC109982881	ENSLBEP00000008892	ENSLBEP00000030967	Uncharacterized protein.	Uncharacterized protein.	0.858
ENSLBEP00000008892	LOC109989501	ENSLBEP00000008892	ENSLBEP00000011084	Uncharacterized protein.	Protein kinase domain-containing protein.	0.958
ENSLBEP00000008892	LOC109990925	ENSLBEP00000008892	ENSLBEP00000034805	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.933
ENSLBEP00000008892	LOC109995112	ENSLBEP00000008892	ENSLBEP00000001259	Uncharacterized protein.	TNF receptor-associated factor.	0.984
ENSLBEP00000008892	LOC109996590	ENSLBEP00000008892	ENSLBEP00000023058	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.984
ENSLBEP00000008892	LOC109998212	ENSLBEP00000008892	ENSLBEP00000020099	Uncharacterized protein.	Baculoviral IAP repeat containing 2.	0.979
ENSLBEP00000008892	ripk1	ENSLBEP00000008892	ENSLBEP00000022169	Uncharacterized protein.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.970
ENSLBEP00000008892	tab3	ENSLBEP00000008892	ENSLBEP00000005328	Uncharacterized protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.974
ENSLBEP00000008892	tradd	ENSLBEP00000008892	ENSLBEP00000032329	Uncharacterized protein.	Tnfrsf1a-associated via death domain.	0.996
LOC109982881	ENSLBEP00000008892	ENSLBEP00000030967	ENSLBEP00000008892	Uncharacterized protein.	Uncharacterized protein.	0.858
LOC109982881	LOC109989501	ENSLBEP00000030967	ENSLBEP00000011084	Uncharacterized protein.	Protein kinase domain-containing protein.	0.765
LOC109982881	LOC109990925	ENSLBEP00000030967	ENSLBEP00000034805	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.785
LOC109982881	LOC109995112	ENSLBEP00000030967	ENSLBEP00000001259	Uncharacterized protein.	TNF receptor-associated factor.	0.922
LOC109982881	LOC109996590	ENSLBEP00000030967	ENSLBEP00000023058	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.926
LOC109982881	LOC109998212	ENSLBEP00000030967	ENSLBEP00000020099	Uncharacterized protein.	Baculoviral IAP repeat containing 2.	0.918
LOC109982881	ripk1	ENSLBEP00000030967	ENSLBEP00000022169	Uncharacterized protein.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.970
LOC109982881	tab3	ENSLBEP00000030967	ENSLBEP00000005328	Uncharacterized protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.742
LOC109982881	tradd	ENSLBEP00000030967	ENSLBEP00000032329	Uncharacterized protein.	Tnfrsf1a-associated via death domain.	0.968
LOC109989501	ENSLBEP00000008892	ENSLBEP00000011084	ENSLBEP00000008892	Protein kinase domain-containing protein.	Uncharacterized protein.	0.958
LOC109989501	LOC109982881	ENSLBEP00000011084	ENSLBEP00000030967	Protein kinase domain-containing protein.	Uncharacterized protein.	0.765