(53 nodes) Retina homeostasis network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC110002776	Uncharacterized protein. (415 aa)
	ccdc66	CCDC66 domain-containing protein. (825 aa)
	LOC109983368	Ciliary rootlet coiled-coil, rootletin family member 2. (1738 aa)
	crb1	Crumbs cell polarity complex component 1. (1298 aa)
	spata7	Spermatogenesis associated 7. (604 aa)
	LOC109979646	Uncharacterized protein. (342 aa)
	crb2	Crumbs cell polarity complex component 2b. (1413 aa)
	whrn	Whirlin a. (984 aa)
	nxnl2	Nucleoredoxin like 2. (181 aa)
	LOC109998277	Growth differentiation factor 5. (495 aa)
	bbs4	Bardet-Biedl syndrome 4. (533 aa)
	nrf1	Nuclear respiratory factor 1. (545 aa)
	mkks	McKusick-Kaufman syndrome. (567 aa)
	ENSLBEP00000022015	Uncharacterized protein. (435 aa)
	ENSLBEP00000021962	Uncharacterized protein. (515 aa)
	bsg	Basigin. (273 aa)
	ENSLBEP00000020795	RP1 axonemal microtubule associated. (236 aa)
	LOC109996630	Nephronophthisis 4. (246 aa)
	ercc6	Excision repair cross-complementation group 6. (1440 aa)
	dctn2	Dynactin 2 (p50). (404 aa)
	ENSLBEP00000017636	Uncharacterized protein. (108 aa)
	ENSLBEP00000016851	Uncharacterized protein. (1537 aa)
	ENSLBEP00000016803	Uncharacterized protein. (261 aa)
	LOC109989564	Nucleoredoxin like 1. (226 aa)
	LOC109989587	Nucleoredoxin like 1. (178 aa)
	bbs10	Uncharacterized protein; Belongs to the TCP-1 chaperonin family. (616 aa)
	LOC109987139	Uncharacterized protein. (1070 aa)
	emc3	ER membrane protein complex subunit 3; Belongs to the EMC3 family. (261 aa)
	cln8	CLN8 transmembrane ER and ERGIC protein. (288 aa)
	ENSLBEP00000012199	Uncharacterized protein. (674 aa)
	LOC109975661	Intraflagellar transport 57 homolog (Chlamydomonas). (404 aa)
	shh	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (397 aa)
	ENSLBEP00000011188	Uncharacterized protein. (164 aa)
	ENSLBEP00000001919	Bardet-Biedl syndrome 12. (623 aa)
	ENSLBEP00000008427	Uncharacterized protein. (528 aa)
	LOC109975584	Uncharacterized protein. (645 aa)
	ENSLBEP00000005998	Uncharacterized protein. (1385 aa)
	LOC109983874	Growth differentiation factor 6a. (440 aa)
	ush1c	Usher syndrome 1C. (680 aa)
	usp45	Ubiquitin carboxyl-terminal hydrolase. (808 aa)
	poc1b	POC1 centriolar protein B. (525 aa)
	cluap1	Clusterin associated protein 1. (422 aa)
	cep290	Centrosomal protein 290. (2289 aa)
	LOC109989420	Whirlin b. (840 aa)
	LOC109987712	Lebercilin LCA5. (790 aa)
	iqcb1	Uncharacterized protein. (698 aa)
	crocc	Uncharacterized protein. (1717 aa)
	ENSLBEP00000028783	TGF_BETA_2 domain-containing protein. (138 aa)
	CRB2	Uncharacterized protein. (1447 aa)
	ENSLBEP00000030910	Uncharacterized protein. (268 aa)
	rp2	Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization. (372 aa)
	bbs1	Bardet-Biedl syndrome 1. (584 aa)
	LOC109997304	Uncharacterized protein. (1418 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000001919	ENSLBEP00000017636	ENSLBEP00000001919	ENSLBEP00000017636	Bardet-Biedl syndrome 12.	Uncharacterized protein.	0.844
ENSLBEP00000001919	bbs1	ENSLBEP00000001919	ENSLBEP00000032407	Bardet-Biedl syndrome 12.	Bardet-Biedl syndrome 1.	0.632
ENSLBEP00000001919	bbs10	ENSLBEP00000001919	ENSLBEP00000015620	Bardet-Biedl syndrome 12.	Uncharacterized protein; Belongs to the TCP-1 chaperonin family.	0.852
ENSLBEP00000001919	bbs4	ENSLBEP00000001919	ENSLBEP00000023312	Bardet-Biedl syndrome 12.	Bardet-Biedl syndrome 4.	0.627
ENSLBEP00000001919	mkks	ENSLBEP00000001919	ENSLBEP00000022702	Bardet-Biedl syndrome 12.	McKusick-Kaufman syndrome.	0.844
ENSLBEP00000005998	ENSLBEP00000016803	ENSLBEP00000005998	ENSLBEP00000016803	Uncharacterized protein.	Uncharacterized protein.	0.525
ENSLBEP00000005998	ENSLBEP00000016851	ENSLBEP00000005998	ENSLBEP00000016851	Uncharacterized protein.	Uncharacterized protein.	0.525
ENSLBEP00000005998	LOC109987712	ENSLBEP00000005998	ENSLBEP00000002955	Uncharacterized protein.	Lebercilin LCA5.	0.558
ENSLBEP00000005998	LOC109989420	ENSLBEP00000005998	ENSLBEP00000003111	Uncharacterized protein.	Whirlin b.	0.628
ENSLBEP00000005998	LOC109997304	ENSLBEP00000005998	ENSLBEP00000034125	Uncharacterized protein.	Uncharacterized protein.	0.432
ENSLBEP00000005998	bbs1	ENSLBEP00000005998	ENSLBEP00000032407	Uncharacterized protein.	Bardet-Biedl syndrome 1.	0.400
ENSLBEP00000005998	ush1c	ENSLBEP00000005998	ENSLBEP00000004453	Uncharacterized protein.	Usher syndrome 1C.	0.642
ENSLBEP00000005998	whrn	ENSLBEP00000005998	ENSLBEP00000025306	Uncharacterized protein.	Whirlin a.	0.628
ENSLBEP00000008427	ENSLBEP00000022015	ENSLBEP00000008427	ENSLBEP00000022015	Uncharacterized protein.	Uncharacterized protein.	0.941
ENSLBEP00000008427	LOC109975661	ENSLBEP00000008427	ENSLBEP00000012042	Uncharacterized protein.	Intraflagellar transport 57 homolog (Chlamydomonas).	0.963
ENSLBEP00000008427	LOC109989420	ENSLBEP00000008427	ENSLBEP00000003111	Uncharacterized protein.	Whirlin b.	0.688
ENSLBEP00000008427	LOC110002776	ENSLBEP00000008427	ENSLBEP00000034604	Uncharacterized protein.	Uncharacterized protein.	0.963
ENSLBEP00000008427	bbs1	ENSLBEP00000008427	ENSLBEP00000032407	Uncharacterized protein.	Bardet-Biedl syndrome 1.	0.450
ENSLBEP00000008427	bbs4	ENSLBEP00000008427	ENSLBEP00000023312	Uncharacterized protein.	Bardet-Biedl syndrome 4.	0.610
ENSLBEP00000008427	cluap1	ENSLBEP00000008427	ENSLBEP00000003402	Uncharacterized protein.	Clusterin associated protein 1.	0.962