22 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ndufa10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (355 aa)
	ndufb6	NADH:ubiquinone oxidoreductase subunit B. (114 aa)
	ndufa8	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (172 aa)
	ndufb9	NADH:ubiquinone oxidoreductase subunit B9; Belongs to the complex I LYR family. (175 aa)
	LOC109986464	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. (465 aa)
	ndufs3	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family. (260 aa)
	LOC109995017	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. (472 aa)
	ndufs7	NADH:ubiquinone oxidoreductase core subunit S7; Belongs to the complex I 20 kDa subunit family. (218 aa)
	LOC109984781	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. (110 aa)
	ndufs2	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family. (466 aa)
	ndufa7	NADH:ubiquinone oxidoreductase subunit A7. (108 aa)
	ENSLBEP00000005890	2Fe-2S ferredoxin-type domain-containing protein. (94 aa)
	ENSLBEP00000006134	CIA30 domain-containing protein. (243 aa)
	coq9	Ubiquinone biosynthesis protein; Lipid-binding protein involved in the biosynthesis of coenzyme Q, also named ubiquinone, an essential lipid-soluble electron transporter for aerobic cellular respiration. (329 aa)
	LOC109999329	Uncharacterized protein; Belongs to the complex I 75 kDa subunit family. (730 aa)
	ndufb8	NADH:ubiquinone oxidoreductase subunit B8. (202 aa)
	LOC109993021	Uncharacterized protein. (212 aa)
	ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1. (307 aa)
	ndufv2	NADH:ubiquinone oxidoreductase core subunit V2. (244 aa)
	NDUFS1	NADH:ubiquinone oxidoreductase core subunit S1; Belongs to the complex I 75 kDa subunit family. (690 aa)
	LOC110000675	NADH:ubiquinone oxidoreductase core subunit S8a. (210 aa)
	ndufs6	NADH:ubiquinone oxidoreductase subunit S6. (148 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000005890	ENSLBEP00000006134	ENSLBEP00000005890	ENSLBEP00000006134	2Fe-2S ferredoxin-type domain-containing protein.	CIA30 domain-containing protein.	0.956
ENSLBEP00000005890	LOC109984781	ENSLBEP00000005890	ENSLBEP00000001472	2Fe-2S ferredoxin-type domain-containing protein.	NADH dehydrogenase [ubiquinone] 1 subunit C2; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.973
ENSLBEP00000005890	LOC109986464	ENSLBEP00000005890	ENSLBEP00000033940	2Fe-2S ferredoxin-type domain-containing protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.998
ENSLBEP00000005890	LOC109993021	ENSLBEP00000005890	ENSLBEP00000012057	2Fe-2S ferredoxin-type domain-containing protein.	Uncharacterized protein.	0.996
ENSLBEP00000005890	LOC109995017	ENSLBEP00000005890	ENSLBEP00000034380	2Fe-2S ferredoxin-type domain-containing protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.998
ENSLBEP00000005890	LOC110000675	ENSLBEP00000005890	ENSLBEP00000023496	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase core subunit S8a.	0.996
ENSLBEP00000005890	coq9	ENSLBEP00000005890	ENSLBEP00000009473	2Fe-2S ferredoxin-type domain-containing protein.	Ubiquinone biosynthesis protein; Lipid-binding protein involved in the biosynthesis of coenzyme Q, also named ubiquinone, an essential lipid-soluble electron transporter for aerobic cellular respiration.	0.425
ENSLBEP00000005890	ndufa10	ENSLBEP00000005890	ENSLBEP00000024098	2Fe-2S ferredoxin-type domain-containing protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.988
ENSLBEP00000005890	ndufa7	ENSLBEP00000005890	ENSLBEP00000003148	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase subunit A7.	0.982
ENSLBEP00000005890	ndufa8	ENSLBEP00000005890	ENSLBEP00000031550	2Fe-2S ferredoxin-type domain-containing protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.996
ENSLBEP00000005890	ndufaf1	ENSLBEP00000005890	ENSLBEP00000017607	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase complex assembly factor 1.	0.956
ENSLBEP00000005890	ndufb6	ENSLBEP00000005890	ENSLBEP00000027836	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase subunit B.	0.983
ENSLBEP00000005890	ndufb8	ENSLBEP00000005890	ENSLBEP00000011425	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase subunit B8.	0.993
ENSLBEP00000005890	ndufb9	ENSLBEP00000005890	ENSLBEP00000032641	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase subunit B9; Belongs to the complex I LYR family.	0.994
ENSLBEP00000005890	ndufs2	ENSLBEP00000005890	ENSLBEP00000001766	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	0.998
ENSLBEP00000005890	ndufs3	ENSLBEP00000005890	ENSLBEP00000034227	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.998
ENSLBEP00000005890	ndufs6	ENSLBEP00000005890	ENSLBEP00000024348	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase subunit S6.	0.995
ENSLBEP00000005890	ndufs7	ENSLBEP00000005890	ENSLBEP00000000735	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase core subunit S7; Belongs to the complex I 20 kDa subunit family.	0.997
ENSLBEP00000005890	ndufv2	ENSLBEP00000005890	ENSLBEP00000018274	2Fe-2S ferredoxin-type domain-containing protein.	NADH:ubiquinone oxidoreductase core subunit V2.	0.999
ENSLBEP00000006134	ENSLBEP00000005890	ENSLBEP00000006134	ENSLBEP00000005890	CIA30 domain-containing protein.	2Fe-2S ferredoxin-type domain-containing protein.	0.956