STRINGSTRING
vcl vcl LOC109995768 LOC109995768 ENSLBEP00000001446 ENSLBEP00000001446 ENSLBEP00000001462 ENSLBEP00000001462 GJA1 GJA1 LOC109992872 LOC109992872 akap6 akap6 ctnnb1 ctnnb1 ENSLBEP00000010466 ENSLBEP00000010466 LOC109990637 LOC109990637 cxadr cxadr ENSLBEP00000019531 ENSLBEP00000019531 scn1b scn1b LOC110002537 LOC110002537 CDH2 CDH2 ENSLBEP00000029576 ENSLBEP00000029576 LOC109997883 LOC109997883 gja5 gja5 CDH2-2 CDH2-2 fermt2 fermt2 LOC109991070 LOC109991070 nrap nrap
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
vclVinculin. (1066 aa)
LOC109995768Uncharacterized protein. (748 aa)
ENSLBEP00000001446Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (203 aa)
ENSLBEP00000001462CNX domain-containing protein. (142 aa)
GJA1Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (388 aa)
LOC109992872Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (412 aa)
akap6Uncharacterized protein. (1080 aa)
ctnnb1Catenin (cadherin-associated protein), beta 1. (782 aa)
ENSLBEP00000010466Uncharacterized protein. (61 aa)
LOC109990637Junction plakoglobin a. (705 aa)
cxadrCXADR Ig-like cell adhesion molecule. (375 aa)
ENSLBEP00000019531Ig-like domain-containing protein. (327 aa)
scn1bIg-like domain-containing protein. (225 aa)
LOC110002537Vinculin a. (596 aa)
CDH2Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (910 aa)
ENSLBEP00000029576Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (343 aa)
LOC109997883Sodium channel, voltage-gated, type I, beta a. (231 aa)
gja5Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (380 aa)
CDH2-2Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (915 aa)
fermt2Fermitin family member 2. (695 aa)
LOC109991070Sodium channel, voltage-gated, type IV, beta a. (233 aa)
nrapNebulin-related anchoring protein. (1667 aa)
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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