(31 nodes) Myotube cell development network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109984173	Transmembrane protein 182b. (256 aa)
	spg11	SPG11 vesicle trafficking associated, spatacsin. (2367 aa)
	ENSLBEP00000008203	PL48 domain-containing protein. (797 aa)
	SMYD3	SET and MYND domain containing 3. (434 aa)
	LOC109984841	Myogenic factor. (301 aa)
	LOC110005628	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP. (436 aa)
	bin3	Bridging integrator 3. (253 aa)
	selenon	Selenoprotein N. (547 aa)
	dner	Delta/notch-like EGF repeat containing. (772 aa)
	LOC109981280	Adenylosuccinate synthetase isozyme 1; Component of the purine nucleotide cycle (PNC), which interconverts IMP and AMP to regulate the nucleotide levels in various tissues, and which contributes to glycolysis and ammoniagenesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP. (456 aa)
	six1	SIX homeobox 1a. (270 aa)
	myf5	Myogenic factor. (241 aa)
	ENSLBEP00000028783	TGF_BETA_2 domain-containing protein. (138 aa)
	nfatc2	Nuclear factor of activated T cells 2a. (900 aa)
	LOC110005162	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2388 aa)
	klhl40	Kelch-like family member 40b. (614 aa)
	ripor2	RHO family interacting cell polarization regulator 2. (1040 aa)
	LOC109986856	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2207 aa)
	LOC109998277	Growth differentiation factor 5. (495 aa)
	LOC109994882	Transmembrane protein 182a. (241 aa)
	smo	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (825 aa)
	LOC109993725	RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (383 aa)
	klhl41	Kelch-like family member 41a. (598 aa)
	LOC109998752	Homer scaffold protein 1b. (363 aa)
	LOC109983874	Growth differentiation factor 6a. (440 aa)
	LOC109997693	Kelch-like family member 40a. (619 aa)
	HOMER1	Homer scaffold protein 1. (356 aa)
	LMOD3	Leiomodin 3. (644 aa)
	LOC109992380	Kelch-like family member 41b. (605 aa)
	shh	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (397 aa)
	LOC110000483	Kell metallo-endopeptidase (Kell blood group). (716 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LMOD3	klhl40	ENSLBEP00000014885	ENSLBEP00000025045	Leiomodin 3.	Kelch-like family member 40b.	0.406
LOC109992380	smo	ENSLBEP00000013266	ENSLBEP00000022377	Kelch-like family member 41b.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.579
LOC109997693	smo	ENSLBEP00000003973	ENSLBEP00000022377	Kelch-like family member 40a.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.579
klhl40	LMOD3	ENSLBEP00000025045	ENSLBEP00000014885	Kelch-like family member 40b.	Leiomodin 3.	0.406
klhl40	smo	ENSLBEP00000025045	ENSLBEP00000022377	Kelch-like family member 40b.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.579
klhl41	smo	ENSLBEP00000022225	ENSLBEP00000022377	Kelch-like family member 41a.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.579
shh	smo	ENSLBEP00000011798	ENSLBEP00000022377	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	0.842
smo	LOC109992380	ENSLBEP00000022377	ENSLBEP00000013266	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	Kelch-like family member 41b.	0.579
smo	LOC109997693	ENSLBEP00000022377	ENSLBEP00000003973	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	Kelch-like family member 40a.	0.579
smo	klhl40	ENSLBEP00000022377	ENSLBEP00000025045	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	Kelch-like family member 40b.	0.579
smo	klhl41	ENSLBEP00000022377	ENSLBEP00000022225	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	Kelch-like family member 41a.	0.579
smo	shh	ENSLBEP00000022377	ENSLBEP00000011798	Smoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family.	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.842