(11 nodes) Kainate selective glutamate receptor activity network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109981552	Si:ch211-251b21.1; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (465 aa)
	GRIK3	Glutamate ionotropic receptor kainate type subunit 3. (885 aa)
	LOC109988989	Uncharacterized protein. (1097 aa)
	LOC109988990	Glutamate ionotropic receptor kainate type subunit 5. (1078 aa)
	ENSLBEP00000016951	ANF_receptor domain-containing protein. (256 aa)
	LOC109988376	Glutamate receptor, ionotropic, kainate 1a. (912 aa)
	LOC109997120	Uncharacterized protein. (829 aa)
	GRIK2	Glutamate ionotropic receptor kainate type subunit 2. (911 aa)
	grik4	Glutamate receptor, ionotropic, kainate 4. (933 aa)
	LOC109980664	Si:dkey-183j2.10; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (535 aa)
	LOC109993374	Glutamate receptor, ionotropic, kainate 1b. (869 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000016951	GRIK2	ENSLBEP00000016951	ENSLBEP00000025362	ANF_receptor domain-containing protein.	Glutamate ionotropic receptor kainate type subunit 2.	0.827
ENSLBEP00000016951	GRIK3	ENSLBEP00000016951	ENSLBEP00000012053	ANF_receptor domain-containing protein.	Glutamate ionotropic receptor kainate type subunit 3.	0.827
ENSLBEP00000016951	LOC109980664	ENSLBEP00000016951	ENSLBEP00000031446	ANF_receptor domain-containing protein.	Si:dkey-183j2.10; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.432
ENSLBEP00000016951	LOC109981552	ENSLBEP00000016951	ENSLBEP00000021503	ANF_receptor domain-containing protein.	Si:ch211-251b21.1; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.473
ENSLBEP00000016951	LOC109988376	ENSLBEP00000016951	ENSLBEP00000018629	ANF_receptor domain-containing protein.	Glutamate receptor, ionotropic, kainate 1a.	0.827
ENSLBEP00000016951	LOC109993374	ENSLBEP00000016951	ENSLBEP00000036619	ANF_receptor domain-containing protein.	Glutamate receptor, ionotropic, kainate 1b.	0.827
ENSLBEP00000016951	LOC109997120	ENSLBEP00000016951	ENSLBEP00000024685	ANF_receptor domain-containing protein.	Uncharacterized protein.	0.827
GRIK2	ENSLBEP00000016951	ENSLBEP00000025362	ENSLBEP00000016951	Glutamate ionotropic receptor kainate type subunit 2.	ANF_receptor domain-containing protein.	0.827
GRIK2	LOC109988376	ENSLBEP00000025362	ENSLBEP00000018629	Glutamate ionotropic receptor kainate type subunit 2.	Glutamate receptor, ionotropic, kainate 1a.	0.626
GRIK2	LOC109988989	ENSLBEP00000025362	ENSLBEP00000014602	Glutamate ionotropic receptor kainate type subunit 2.	Uncharacterized protein.	0.832
GRIK2	LOC109988990	ENSLBEP00000025362	ENSLBEP00000014882	Glutamate ionotropic receptor kainate type subunit 2.	Glutamate ionotropic receptor kainate type subunit 5.	0.831
GRIK2	LOC109993374	ENSLBEP00000025362	ENSLBEP00000036619	Glutamate ionotropic receptor kainate type subunit 2.	Glutamate receptor, ionotropic, kainate 1b.	0.626
GRIK2	grik4	ENSLBEP00000025362	ENSLBEP00000026851	Glutamate ionotropic receptor kainate type subunit 2.	Glutamate receptor, ionotropic, kainate 4.	0.832
GRIK3	ENSLBEP00000016951	ENSLBEP00000012053	ENSLBEP00000016951	Glutamate ionotropic receptor kainate type subunit 3.	ANF_receptor domain-containing protein.	0.827
GRIK3	LOC109988989	ENSLBEP00000012053	ENSLBEP00000014602	Glutamate ionotropic receptor kainate type subunit 3.	Uncharacterized protein.	0.833
GRIK3	LOC109988990	ENSLBEP00000012053	ENSLBEP00000014882	Glutamate ionotropic receptor kainate type subunit 3.	Glutamate ionotropic receptor kainate type subunit 5.	0.832
GRIK3	grik4	ENSLBEP00000012053	ENSLBEP00000026851	Glutamate ionotropic receptor kainate type subunit 3.	Glutamate receptor, ionotropic, kainate 4.	0.832
LOC109980664	ENSLBEP00000016951	ENSLBEP00000031446	ENSLBEP00000016951	Si:dkey-183j2.10; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	ANF_receptor domain-containing protein.	0.432
LOC109981552	ENSLBEP00000016951	ENSLBEP00000021503	ENSLBEP00000016951	Si:ch211-251b21.1; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	ANF_receptor domain-containing protein.	0.473
LOC109988376	ENSLBEP00000016951	ENSLBEP00000018629	ENSLBEP00000016951	Glutamate receptor, ionotropic, kainate 1a.	ANF_receptor domain-containing protein.	0.827