(91 nodes) Membrane docking network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109975939	Ras-related protein Rab-8B. (206 aa)
	ENSLBEP00000000288	Uncharacterized protein. (90 aa)
	stx8	Syntaxin 8. (237 aa)
	ENSLBEP00000000651	Uncharacterized protein. (350 aa)
	ENSLBEP00000000895	Uncharacterized protein. (287 aa)
	LOC109984025	Unc-13 homolog A. (1562 aa)
	ENSLBEP00000002533	Vesicle-associated membrane protein 8 (endobrevin). (119 aa)
	LOC109993436	Uncharacterized protein. (207 aa)
	stx17	Syntaxin 17; Belongs to the syntaxin family. (300 aa)
	LOC109989416	Syntaxin binding protein 1b; Belongs to the STXBP/unc-18/SEC1 family. (605 aa)
	cep290	Centrosomal protein 290. (2289 aa)
	LOC109980034	Uncharacterized protein. (207 aa)
	LOC109978860	Synaptosome associated protein 29. (250 aa)
	LOC109995215	GRAM domain-containing protein. (318 aa)
	ENSLBEP00000005595	Uncharacterized protein. (220 aa)
	ENSLBEP00000005766	Uncharacterized protein. (140 aa)
	ENSLBEP00000005834	Uncharacterized protein. (230 aa)
	LOC109976804	Calcineurin-like EF-hand protein 1. (195 aa)
	stxbp3	Syntaxin binding protein 3; Belongs to the STXBP/unc-18/SEC1 family. (591 aa)
	LOC109977797	Syntaxin 11a; Belongs to the syntaxin family. (293 aa)
	LOC109978224	t-SNARE coiled-coil homology domain-containing protein. (294 aa)
	ENSLBEP00000007795	annotation not available (90 aa)
	LOC109978527	Uncharacterized protein. (552 aa)
	RAB8A	RAB8A, member RAS oncogene family. (206 aa)
	LOC110006059	Syntaxin 8. (244 aa)
	stx5	Syntaxin 5A; Belongs to the syntaxin family. (329 aa)
	LOC110002843	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (380 aa)
	LOC109996403	RAB3D, member RAS oncogene family, b. (222 aa)
	ENSLBEP00000011188	Uncharacterized protein. (164 aa)
	LOC110006125	Uncharacterized protein. (216 aa)
	stx3	Syntaxin 3A; Belongs to the syntaxin family. (294 aa)
	LOC109995936	Syntaxin 4; Belongs to the syntaxin family. (297 aa)
	UNC13C	Unc-13 homolog C. (2098 aa)
	LOC109991894	Syntaxin-2-like. (281 aa)
	LOC110001676	YqaJ domain-containing protein. (356 aa)
	ENSLBEP00000015241	Extended synaptotagmin-like protein 1a. (756 aa)
	LOC109975789	Syntaxin 16; Belongs to the syntaxin family. (302 aa)
	stx10	Syntaxin 10. (247 aa)
	rab15	RAB15, member RAS oncogene family. (253 aa)
	rab12	RAB12, member RAS oncogene family. (242 aa)
	LOC109999997	Uncharacterized protein. (929 aa)
	CHP1	Calcineurin B homologous protein 1. (195 aa)
	ENSLBEP00000019157	Uncharacterized protein. (83 aa)
	LOC109991974	RAB3A, member RAS oncogene family, b. (230 aa)
	LOC109999456	Uncharacterized protein. (206 aa)
	ENSLBEP00000019759	Uncharacterized protein. (85 aa)
	ENSLBEP00000021028	SynN domain-containing protein. (193 aa)
	uso1	USO1 vesicle transport factor. (975 aa)
	LOC109980880	RAB8A, member RAS oncogene family. (206 aa)
	rab3c	RAB3C, member RAS oncogene family. (225 aa)
	LOC109989139	Uncharacterized protein. (1460 aa)
	rab10	RAB10, member RAS oncogene family. (201 aa)
	LOC109982205	Multiple EGF-like-domains 8. (207 aa)
	exoc4	Exocyst complex component 4. (1001 aa)
	LOC109982784	Uncharacterized protein. (1584 aa)
	gramd2a	GRAM domain containing 2A. (362 aa)
	ENSLBEP00000023797	Extended synaptotagmin-like protein 1b. (1058 aa)
	LOC110003064	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (257 aa)
	LOC110002571	Extended synaptotagmin-like protein 2b. (837 aa)
	STX11	Syntaxin 11; Belongs to the syntaxin family. (300 aa)
	LOC109985657	Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family. (603 aa)
	LOC110002613	Syntaxin 1B; Belongs to the syntaxin family. (302 aa)
	scfd2	Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family. (693 aa)
	vps11	Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (926 aa)
	ENSLBEP00000028040	Uncharacterized protein. (256 aa)
	unc13b	Uncharacterized protein. (1546 aa)
	LOC109985770	Syntaxin 1A (brain); Belongs to the syntaxin family. (323 aa)
	stxbp2	Syntaxin binding protein 2; Belongs to the STXBP/unc-18/SEC1 family. (592 aa)
	tsnare1	Si:ch211-208k15.1; Belongs to the syntaxin family. (287 aa)
	stx16	Syntaxin 16. (302 aa)
	LOC110003262	Uncharacterized protein. (226 aa)
	LOC110001933	SMP-LTD domain-containing protein. (249 aa)
	stx12	Syntaxin 12; Belongs to the syntaxin family. (295 aa)
	LOC109982969	Syntaxin 7-like; Belongs to the syntaxin family. (249 aa)
	vps18	VPS18 core subunit of CORVET and HOPS complexes. (982 aa)
	LOC109991545	Synaptosome associated protein 29. (260 aa)
	atg14	Autophagy related 14. (488 aa)
	LOC109983340	Syntaxin 2b; Belongs to the syntaxin family. (293 aa)
	exoc2	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (922 aa)
	LOC110003475	Syntaxin 12, like; Belongs to the syntaxin family. (268 aa)
	LOC109992229	Extended synaptotagmin-like protein 3. (848 aa)
	ENSLBEP00000035051	Extended synaptotagmin-like protein 2a. (585 aa)
	ENSLBEP00000035528	Uncharacterized protein. (314 aa)
	rab13	RAB13, member RAS oncogene family. (200 aa)
	LOC109981272	RAB15, member RAS oncogene family. (212 aa)
	LOC110002810	Uncharacterized protein. (524 aa)
	ENSLBEP00000036416	Uncharacterized protein. (328 aa)
	cep83	Centrosomal protein 83. (721 aa)
	STX19	Syntaxin 19. (302 aa)
	rab3a	Uncharacterized protein. (239 aa)
	cln3	Battenin. (436 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000002533	ENSLBEP00000019157	ENSLBEP00000002533	ENSLBEP00000019157	Vesicle-associated membrane protein 8 (endobrevin).	Uncharacterized protein.	0.867
ENSLBEP00000002533	ENSLBEP00000019759	ENSLBEP00000002533	ENSLBEP00000019759	Vesicle-associated membrane protein 8 (endobrevin).	Uncharacterized protein.	0.433
ENSLBEP00000002533	ENSLBEP00000021028	ENSLBEP00000002533	ENSLBEP00000021028	Vesicle-associated membrane protein 8 (endobrevin).	SynN domain-containing protein.	0.867
ENSLBEP00000002533	ENSLBEP00000035528	ENSLBEP00000002533	ENSLBEP00000035528	Vesicle-associated membrane protein 8 (endobrevin).	Uncharacterized protein.	0.480
ENSLBEP00000002533	LOC109975789	ENSLBEP00000002533	ENSLBEP00000015477	Vesicle-associated membrane protein 8 (endobrevin).	Syntaxin 16; Belongs to the syntaxin family.	0.859
ENSLBEP00000002533	LOC109977797	ENSLBEP00000002533	ENSLBEP00000006775	Vesicle-associated membrane protein 8 (endobrevin).	Syntaxin 11a; Belongs to the syntaxin family.	0.889
ENSLBEP00000002533	LOC109978224	ENSLBEP00000002533	ENSLBEP00000006794	Vesicle-associated membrane protein 8 (endobrevin).	t-SNARE coiled-coil homology domain-containing protein.	0.889
ENSLBEP00000002533	LOC109978860	ENSLBEP00000002533	ENSLBEP00000004301	Vesicle-associated membrane protein 8 (endobrevin).	Synaptosome associated protein 29.	0.992
ENSLBEP00000002533	LOC109980034	ENSLBEP00000002533	ENSLBEP00000003568	Vesicle-associated membrane protein 8 (endobrevin).	Uncharacterized protein.	0.433
ENSLBEP00000002533	LOC109982784	ENSLBEP00000002533	ENSLBEP00000023407	Vesicle-associated membrane protein 8 (endobrevin).	Uncharacterized protein.	0.480
ENSLBEP00000002533	LOC109982969	ENSLBEP00000002533	ENSLBEP00000031697	Vesicle-associated membrane protein 8 (endobrevin).	Syntaxin 7-like; Belongs to the syntaxin family.	0.965
ENSLBEP00000002533	LOC109983340	ENSLBEP00000002533	ENSLBEP00000032804	Vesicle-associated membrane protein 8 (endobrevin).	Syntaxin 2b; Belongs to the syntaxin family.	0.867
ENSLBEP00000002533	LOC109984025	ENSLBEP00000002533	ENSLBEP00000001422	Vesicle-associated membrane protein 8 (endobrevin).	Unc-13 homolog A.	0.480
ENSLBEP00000002533	LOC109985657	ENSLBEP00000002533	ENSLBEP00000025466	Vesicle-associated membrane protein 8 (endobrevin).	Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.	0.826
ENSLBEP00000002533	LOC109985770	ENSLBEP00000002533	ENSLBEP00000029019	Vesicle-associated membrane protein 8 (endobrevin).	Syntaxin 1A (brain); Belongs to the syntaxin family.	0.867
ENSLBEP00000002533	LOC109989139	ENSLBEP00000002533	ENSLBEP00000022248	Vesicle-associated membrane protein 8 (endobrevin).	Uncharacterized protein.	0.480
ENSLBEP00000002533	LOC109989416	ENSLBEP00000002533	ENSLBEP00000003236	Vesicle-associated membrane protein 8 (endobrevin).	Syntaxin binding protein 1b; Belongs to the STXBP/unc-18/SEC1 family.	0.826
ENSLBEP00000002533	LOC109991545	ENSLBEP00000002533	ENSLBEP00000032494	Vesicle-associated membrane protein 8 (endobrevin).	Synaptosome associated protein 29.	0.992
ENSLBEP00000002533	LOC109991894	ENSLBEP00000002533	ENSLBEP00000012806	Vesicle-associated membrane protein 8 (endobrevin).	Syntaxin-2-like.	0.766
ENSLBEP00000002533	LOC109991974	ENSLBEP00000002533	ENSLBEP00000019238	Vesicle-associated membrane protein 8 (endobrevin).	RAB3A, member RAS oncogene family, b.	0.433