STRINGSTRING
LOC110001530 LOC110001530 LOC109983738 LOC109983738 LOC109983749 LOC109983749 usb1 usb1 LOC109996898 LOC109996898 ENSLBEP00000023437 ENSLBEP00000023437 LOC109998408 LOC109998408 LOC109987672 LOC109987672 LOC109990189 LOC109990189 LOC110005592 LOC110005592 lef1 lef1 LOC109979388 LOC109979388
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC110001530Uncharacterized protein. (159 aa)
LOC109983738Si:dkey-61p9.11. (2088 aa)
LOC109983749Carrier domain-containing protein. (2069 aa)
usb1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (313 aa)
LOC109996898Jagunal homolog 1a. (183 aa)
ENSLBEP00000023437Carrier domain-containing protein. (530 aa)
LOC109998408Dehydrogenase/reductase (SDR family) member 7B; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (310 aa)
LOC109987672Coiled-coil domain containing 57. (2508 aa)
LOC109990189Jagunal homolog 1b. (196 aa)
LOC110005592Uncharacterized protein. (183 aa)
lef1Lymphoid enhancer-binding factor 1. (379 aa)
LOC109979388Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (309 aa)
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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