(121 nodes) Intracellular receptor signaling pathway network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109992401	Uncharacterized protein. (500 aa)
	LOC110006071	Daxx domain-containing protein. (746 aa)
	LOC109981981	Hepatocyte nuclear factor 4, gamma. (409 aa)
	LOC109998695	Uncharacterized protein. (433 aa)
	nr2f1	Nuclear receptor subfamily 2, group F, member 1a. (411 aa)
	LOC109986633	Retinoid x receptor, beta b. (444 aa)
	LOC109980982	Nuclear receptor subfamily 2, group C, member 2. (587 aa)
	rwdd1	RWD domain containing 1. (240 aa)
	ripk2	Receptor-interacting serine-threonine kinase 2. (569 aa)
	ENSLBEP00000011108	Family with sequence similarity 120B. (485 aa)
	LOC109997529	Uncharacterized protein. (392 aa)
	LOC109977686	Uncharacterized protein. (515 aa)
	ENSLBEP00000013280	BHLH domain-containing protein. (72 aa)
	LOC109994745	Aryl hydrocarbon receptor 2. (953 aa)
	LOC109994767	Aryl hydrocarbon receptor 1b. (919 aa)
	rarg	Retinoic acid receptor gamma a. (501 aa)
	LOC109984954	Nuclear receptor subfamily 1, group D, member 4a. (575 aa)
	LOC109998717	LSM14A mRNA processing body assembly factor a. (431 aa)
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (635 aa)
	nr2f2	Nuclear receptor subfamily 2, group F, member 2. (417 aa)
	nr2c1	Nuclear receptor subfamily 2, group C, member 1. (611 aa)
	LOC109979724	Uncharacterized protein. (349 aa)
	nr5a1	Nuclear receptor subfamily 5, group A, member 1a. (487 aa)
	nr6a1	Nuclear receptor subfamily 6, group A, member 1a. (468 aa)
	ppara	Peroxisome proliferator-activated receptor alpha a. (474 aa)
	LOC109992652	Uncharacterized protein. (696 aa)
	CLPB	ClpB homolog, mitochondrial AAA ATPase chaperonin. (311 aa)
	nr1h4	Nuclear receptor subfamily 1, group H, member 4. (486 aa)
	rarb	Retinoic acid receptor beta. (460 aa)
	LOC109995083	Uncharacterized protein. (935 aa)
	thrb	Thyroid hormone receptor beta. (395 aa)
	LOC109987528	Nuclear receptor subfamily 1, group D, member 2b. (586 aa)
	LOC110001427	Nuclear receptor subfamily 2, group F, member 6b. (406 aa)
	LOC110003551	Uncharacterized protein. (492 aa)
	LOC109994498	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor). (772 aa)
	LOC109998454	Uncharacterized protein; Belongs to the DEAD box helicase family. (645 aa)
	LOC109987228	Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family. (511 aa)
	LOC110003529	Death-domain associated protein. (755 aa)
	tmf1	TATA element modulatory factor 1. (1158 aa)
	nr1h3	Nuclear receptor subfamily 1, group H, member 3. (464 aa)
	NR3C1	Nuclear receptor subfamily 3 group C member 1. (792 aa)
	PPARG	Peroxisome proliferator activated receptor gamma. (551 aa)
	LOC109982581	Ubiquitin protein ligase E3A. (827 aa)
	hnf4a	Hepatocyte nuclear factor 4, alpha. (453 aa)
	ubr5	Ubiquitin protein ligase E3 component n-recognin 5. (2861 aa)
	NR2E3	Nuclear receptor subfamily 2 group E member 3. (438 aa)
	lacc1	Laccase (multicopper oxidoreductase) domain containing 1. (421 aa)
	LOC109996231	Tyrosine-protein kinase. (439 aa)
	NR5A1	Nuclear receptor subfamily 5 group A member 1. (434 aa)
	LOC109990268	Innate immunity activator b. (576 aa)
	LOC110001279	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (598 aa)
	LOC109983356	Ring finger protein 34a. (363 aa)
	nr5a2	Nuclear receptor subfamily 5, group A, member 2. (472 aa)
	LOC109986726	Peroxisome proliferator-activated receptor gamma, coactivator 1 beta. (736 aa)
	LOC110006260	RWD domain-containing protein. (182 aa)
	LOC109976227	PAS domain-containing protein. (859 aa)
	ENSLBEP00000016816	Uncharacterized protein. (241 aa)
	LOC109991998	Nuclear receptor subfamily 2, group F, member 6a. (405 aa)
	ENSLBEP00000017466	Nuclear receptor domain-containing protein. (90 aa)
	ENSLBEP00000017934	Nuclear receptor subfamily 1, group H, member 5. (478 aa)
	nr2e1	Nuclear receptor subfamily 2, group E, member 1. (397 aa)
	ptf1a	Pancreas associated transcription factor 1a. (273 aa)
	LOC109981070	Uncharacterized protein. (662 aa)
	ppard	Peroxisome proliferator-activated receptor delta b. (510 aa)
	inava	Innate immunity activator a. (589 aa)
	rara	Retinoic acid receptor, alpha a. (455 aa)
	LOC109991330	Uncharacterized protein. (1016 aa)
	pitx2	Homeobox protein. (313 aa)
	LOC109986406	Nuclear receptor subfamily 4, group A, member 1. (568 aa)
	LOC109992045	Nuclear receptor subfamily 2, group F, member 5. (371 aa)
	LOC109988416	Estrogen receptor 2a. (564 aa)
	ENSLBEP00000021433	Nuclear receptor subfamily 2, group E, member 3. (333 aa)
	LOC109985589	Vitamin D receptor a. (425 aa)
	LOC109992476	Retinoic acid receptor, gamma b. (494 aa)
	LOC109996088	RAR-related orphan receptor C a. (474 aa)
	LOC109992496	Nuclear receptor subfamily 1, group D, member 4b. (572 aa)
	rora	RAR-related orphan receptor A, paralog a. (519 aa)
	LOC110005173	Nuclear receptor subfamily 1, group d, member 1. (588 aa)
	trip4	Thyroid hormone receptor interactor 4. (573 aa)
	LOC109994312	Uncharacterized protein. (467 aa)
	UBE3A	Ubiquitin protein ligase E3A. (789 aa)
	ENSLBEP00000026256	BHLH domain-containing protein. (67 aa)
	LOC110004723	PAS domain-containing protein. (842 aa)
	PPARA	Peroxisome proliferator-activated receptor alpha b. (468 aa)
	ENSLBEP00000026903	Ring finger protein 34b. (348 aa)
	LOC109993808	Vitamin D receptor b. (425 aa)
	nr4a2	Nuclear receptor subfamily 4, group A, member 2b. (597 aa)
	otulin	OTU deubiquitinase with linear linkage specificity a. (732 aa)
	LOC109989239	Nuclear receptor subfamily 5, group A, member 5. (538 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (318 aa)
	rorb	RAR-related orphan receptor B. (472 aa)
	LOC110001923	Uncharacterized protein. (471 aa)
	ENSLBEP00000029271	NR LBD domain-containing protein. (144 aa)
	rxra	Retinoid X receptor, alpha a. (467 aa)
	LOC109999627	Uncharacterized protein. (485 aa)
	NR4A1	Nuclear receptor subfamily 4 group A member 1. (587 aa)
	ESRRB	Estrogen-related receptor beta. (452 aa)
	pgr	Progesterone receptor. (707 aa)
	lsm14a	LSM14A mRNA processing body assembly factor b. (448 aa)
	ENSLBEP00000001334	Si:ch211-15b10.6. (174 aa)
	LOC110004242	Uncharacterized protein. (401 aa)
	LOC109987682	Nuclear receptor domain-containing protein. (300 aa)
	ENSLBEP00000002121	RAR-related orphan receptor C b. (489 aa)
	LOC109992851	Alpha-type protein kinase domain-containing protein. (1117 aa)
	nr4a3	Nuclear receptor subfamily 4, group A, member 3. (673 aa)
	LOC109991030	Estrogen-related receptor alpha. (433 aa)
	LOC109975478	Cytochrome P450, family 7, subfamily B, polypeptide 1. (537 aa)
	SRC	Tyrosine-protein kinase. (549 aa)
	LOC109977616	Estrogen receptor 2b. (693 aa)
	LOC109988834	Nuclear receptor subfamily 1, group D, member 2a. (658 aa)
	ENSLBEP00000005272	Uncharacterized protein. (339 aa)
	dhx58	DEXH (Asp-Glu-X-His) box polypeptide 58. (679 aa)
	LOC110002999	Estrogen-related receptor gamma a. (458 aa)
	LOC110001654	NK3 homeobox 1. (191 aa)
	ifih1	Interferon induced with helicase C domain 1. (990 aa)
	LOC109983659	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (308 aa)
	phb	Prohibitin. (271 aa)
	LOC109989991	Uncharacterized protein. (571 aa)
	LOC109984160	Uncharacterized protein. (575 aa)
	snw1	SNW domain containing 1. (595 aa)
	LOC109981436	Uncharacterized protein. (790 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLPB	phb	ENSLBEP00000037233	ENSLBEP00000007336	ClpB homolog, mitochondrial AAA ATPase chaperonin.	Prohibitin.	0.521
DDX5	LOC109977616	ENSLBEP00000013902	ENSLBEP00000004032	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Estrogen receptor 2b.	0.686
DDX5	LOC109979724	ENSLBEP00000013902	ENSLBEP00000038751	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.686
DDX5	LOC109988416	ENSLBEP00000013902	ENSLBEP00000021413	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Estrogen receptor 2a.	0.686
DDX5	LOC109998717	ENSLBEP00000013902	ENSLBEP00000013655	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	LSM14A mRNA processing body assembly factor a.	0.484
DDX5	lsm14a	ENSLBEP00000013902	ENSLBEP00000000586	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	LSM14A mRNA processing body assembly factor b.	0.484
DDX5	snw1	ENSLBEP00000013902	ENSLBEP00000007913	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	SNW domain containing 1.	0.427
ENSLBEP00000001334	LOC109992851	ENSLBEP00000001334	ENSLBEP00000002742	Si:ch211-15b10.6.	Alpha-type protein kinase domain-containing protein.	0.868
ENSLBEP00000001334	ripk2	ENSLBEP00000001334	ENSLBEP00000010906	Si:ch211-15b10.6.	Receptor-interacting serine-threonine kinase 2.	0.432
ENSLBEP00000002121	LOC109999627	ENSLBEP00000002121	ENSLBEP00000029656	RAR-related orphan receptor C b.	Uncharacterized protein.	0.681
ENSLBEP00000002121	rora	ENSLBEP00000002121	ENSLBEP00000023242	RAR-related orphan receptor C b.	RAR-related orphan receptor A, paralog a.	0.679
ENSLBEP00000002121	rorb	ENSLBEP00000002121	ENSLBEP00000029109	RAR-related orphan receptor C b.	RAR-related orphan receptor B.	0.819
ENSLBEP00000005272	LOC109981070	ENSLBEP00000005272	ENSLBEP00000018998	Uncharacterized protein.	Uncharacterized protein.	0.852
ENSLBEP00000005272	LOC109989239	ENSLBEP00000005272	ENSLBEP00000028717	Uncharacterized protein.	Nuclear receptor subfamily 5, group A, member 5.	0.473
ENSLBEP00000005272	LOC109994498	ENSLBEP00000005272	ENSLBEP00000035531	Uncharacterized protein.	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).	0.619
ENSLBEP00000005272	LOC109996231	ENSLBEP00000005272	ENSLBEP00000031227	Uncharacterized protein.	Tyrosine-protein kinase.	0.412
ENSLBEP00000005272	LOC110001654	ENSLBEP00000005272	ENSLBEP00000006731	Uncharacterized protein.	NK3 homeobox 1.	0.525
ENSLBEP00000005272	LOC110003529	ENSLBEP00000005272	ENSLBEP00000034789	Uncharacterized protein.	Death-domain associated protein.	0.406
ENSLBEP00000005272	LOC110006071	ENSLBEP00000005272	ENSLBEP00000009121	Uncharacterized protein.	Daxx domain-containing protein.	0.406
ENSLBEP00000005272	NR3C1	ENSLBEP00000005272	ENSLBEP00000033771	Uncharacterized protein.	Nuclear receptor subfamily 3 group C member 1.	0.656