36 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLBEP00000010675	Uncharacterized protein. (243 aa)
	ENSLBEP00000025256	Uncharacterized protein. (919 aa)
	LOC109983917	Inhibitor of DNA binding 1, HLH protein. (177 aa)
	ENSLBEP00000021422	DUF4757 domain-containing protein. (156 aa)
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2492 aa)
	itgb1bp1	Integrin beta 1 binding protein 1. (200 aa)
	wnt11	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (358 aa)
	LOC109991911	Uncharacterized protein. (261 aa)
	MYOC	Myocilin. (479 aa)
	LOC109982632	Regulator of cell cycle. (126 aa)
	LOC109986099	Neurofibromin 2a (merlin). (554 aa)
	LOC109977584	LIM zinc-binding domain-containing protein. (849 aa)
	LOC109996637	Profilin; Belongs to the profilin family. (139 aa)
	myoc	Myocilin. (457 aa)
	ppm1e	Protein phosphatase, Mg2+/Mn2+ dependent, 1E. (621 aa)
	LOC109986872	Testis associated actin remodelling kinase 1. (731 aa)
	ENSLBEP00000026634	Synaptopodin 2-like a. (697 aa)
	LOC109985666	TSC complex subunit 1b. (1297 aa)
	LOC109998878	SERPIN domain-containing protein; Belongs to the serpin family. (470 aa)
	lpar1	Lysophosphatidic acid receptor 1; Belongs to the G-protein coupled receptor 1 family. (353 aa)
	serpinf2	SERPIN domain-containing protein; Belongs to the serpin family. (372 aa)
	bag4	BCL2 associated athanogene 4. (388 aa)
	SYNPO2	Synaptopodin 2. (1062 aa)
	tgfb3	Transforming growth factor beta; Belongs to the TGF-beta family. (405 aa)
	LOC109998523	Uncharacterized protein. (1109 aa)
	LOC109987676	Transforming growth factor beta; Belongs to the TGF-beta family. (408 aa)
	ENSLBEP00000003698	Uncharacterized protein; Belongs to the profilin family. (128 aa)
	ppm1f	Protein phosphatase, Mg2+/Mn2+ dependent, 1F. (439 aa)
	LOC109997465	Testis associated actin remodelling kinase 2. (626 aa)
	LOC109981964	Neuropilin; Belongs to the neuropilin family. (874 aa)
	LOC110002065	Rap guanine nucleotide exchange factor (GEF) 3. (748 aa)
	ENSLBEP00000037505	Neurofibromin 2b (merlin). (404 aa)
	ENSLBEP00000036923	Uncharacterized protein. (616 aa)
	LOC109988663	Protein S100; Belongs to the S-100 family. (100 aa)
	pfn2	Profilin; Belongs to the profilin family. (139 aa)
	ccn2	Cellular communication network factor 2a. (346 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000010675	LOC109986872	ENSLBEP00000010675	ENSLBEP00000025918	Uncharacterized protein.	Testis associated actin remodelling kinase 1.	0.526
ENSLBEP00000010675	LOC109997465	ENSLBEP00000010675	ENSLBEP00000005569	Uncharacterized protein.	Testis associated actin remodelling kinase 2.	0.526
ENSLBEP00000010675	mtor	ENSLBEP00000010675	ENSLBEP00000018404	Uncharacterized protein.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.961
ENSLBEP00000021422	LOC109977584	ENSLBEP00000021422	ENSLBEP00000008305	DUF4757 domain-containing protein.	LIM zinc-binding domain-containing protein.	0.899
ENSLBEP00000037505	LOC109986099	ENSLBEP00000037505	ENSLBEP00000012197	Neurofibromin 2b (merlin).	Neurofibromin 2a (merlin).	0.841
LOC109977584	ENSLBEP00000021422	ENSLBEP00000008305	ENSLBEP00000021422	LIM zinc-binding domain-containing protein.	DUF4757 domain-containing protein.	0.899
LOC109982632	wnt11	ENSLBEP00000014991	ENSLBEP00000016783	Regulator of cell cycle.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.493
LOC109985666	LOC109986872	ENSLBEP00000026751	ENSLBEP00000025918	TSC complex subunit 1b.	Testis associated actin remodelling kinase 1.	0.526
LOC109985666	LOC109997465	ENSLBEP00000026751	ENSLBEP00000005569	TSC complex subunit 1b.	Testis associated actin remodelling kinase 2.	0.526
LOC109985666	mtor	ENSLBEP00000026751	ENSLBEP00000018404	TSC complex subunit 1b.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.961
LOC109986099	ENSLBEP00000037505	ENSLBEP00000012197	ENSLBEP00000037505	Neurofibromin 2a (merlin).	Neurofibromin 2b (merlin).	0.841
LOC109986872	ENSLBEP00000010675	ENSLBEP00000025918	ENSLBEP00000010675	Testis associated actin remodelling kinase 1.	Uncharacterized protein.	0.526
LOC109986872	LOC109985666	ENSLBEP00000025918	ENSLBEP00000026751	Testis associated actin remodelling kinase 1.	TSC complex subunit 1b.	0.526
LOC109986872	ppm1e	ENSLBEP00000025918	ENSLBEP00000009987	Testis associated actin remodelling kinase 1.	Protein phosphatase, Mg2+/Mn2+ dependent, 1E.	0.402
LOC109986872	ppm1f	ENSLBEP00000025918	ENSLBEP00000003895	Testis associated actin remodelling kinase 1.	Protein phosphatase, Mg2+/Mn2+ dependent, 1F.	0.402
LOC109987676	tgfb3	ENSLBEP00000001759	ENSLBEP00000000548	Transforming growth factor beta; Belongs to the TGF-beta family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.840
LOC109997465	ENSLBEP00000010675	ENSLBEP00000005569	ENSLBEP00000010675	Testis associated actin remodelling kinase 2.	Uncharacterized protein.	0.526
LOC109997465	LOC109985666	ENSLBEP00000005569	ENSLBEP00000026751	Testis associated actin remodelling kinase 2.	TSC complex subunit 1b.	0.526
LOC109997465	ppm1e	ENSLBEP00000005569	ENSLBEP00000009987	Testis associated actin remodelling kinase 2.	Protein phosphatase, Mg2+/Mn2+ dependent, 1E.	0.402
LOC109997465	ppm1f	ENSLBEP00000005569	ENSLBEP00000003895	Testis associated actin remodelling kinase 2.	Protein phosphatase, Mg2+/Mn2+ dependent, 1F.	0.402