10 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109988724	Si:ch211-1o7.3. (584 aa)
	ENSLBEP00000037432	Shootin 1. (472 aa)
	LOC109996772	Ras homolog family member Ub. (243 aa)
	rhov	Ras homolog family member V. (236 aa)
	LOC110003296	Uncharacterized protein. (138 aa)
	LOC109995395	Uncharacterized protein. (191 aa)
	CDC42	Cell division cycle 42. (203 aa)
	LOC109994148	Cell division cycle 42. (191 aa)
	LOC109995857	Uncharacterized protein. (259 aa)
	rhou	Uncharacterized protein. (273 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	LOC109995395	ENSLBEP00000014221	ENSLBEP00000015957	Cell division cycle 42.	Uncharacterized protein.	0.815
CDC42	LOC109996772	ENSLBEP00000014221	ENSLBEP00000035122	Cell division cycle 42.	Ras homolog family member Ub.	0.574
CDC42	LOC110003296	ENSLBEP00000014221	ENSLBEP00000030398	Cell division cycle 42.	Uncharacterized protein.	0.816
CDC42	rhou	ENSLBEP00000014221	ENSLBEP00000003807	Cell division cycle 42.	Uncharacterized protein.	0.572
CDC42	rhov	ENSLBEP00000014221	ENSLBEP00000032326	Cell division cycle 42.	Ras homolog family member V.	0.578
LOC109994148	LOC109995395	ENSLBEP00000013739	ENSLBEP00000015957	Cell division cycle 42.	Uncharacterized protein.	0.815
LOC109994148	LOC109996772	ENSLBEP00000013739	ENSLBEP00000035122	Cell division cycle 42.	Ras homolog family member Ub.	0.573
LOC109994148	LOC110003296	ENSLBEP00000013739	ENSLBEP00000030398	Cell division cycle 42.	Uncharacterized protein.	0.816
LOC109994148	rhou	ENSLBEP00000013739	ENSLBEP00000003807	Cell division cycle 42.	Uncharacterized protein.	0.571
LOC109994148	rhov	ENSLBEP00000013739	ENSLBEP00000032326	Cell division cycle 42.	Ras homolog family member V.	0.577
LOC109995395	CDC42	ENSLBEP00000015957	ENSLBEP00000014221	Uncharacterized protein.	Cell division cycle 42.	0.815
LOC109995395	LOC109994148	ENSLBEP00000015957	ENSLBEP00000013739	Uncharacterized protein.	Cell division cycle 42.	0.815
LOC109995395	LOC109996772	ENSLBEP00000015957	ENSLBEP00000035122	Uncharacterized protein.	Ras homolog family member Ub.	0.531
LOC109995395	rhou	ENSLBEP00000015957	ENSLBEP00000003807	Uncharacterized protein.	Uncharacterized protein.	0.528
LOC109995395	rhov	ENSLBEP00000015957	ENSLBEP00000032326	Uncharacterized protein.	Ras homolog family member V.	0.535
LOC109996772	CDC42	ENSLBEP00000035122	ENSLBEP00000014221	Ras homolog family member Ub.	Cell division cycle 42.	0.574
LOC109996772	LOC109994148	ENSLBEP00000035122	ENSLBEP00000013739	Ras homolog family member Ub.	Cell division cycle 42.	0.573
LOC109996772	LOC109995395	ENSLBEP00000035122	ENSLBEP00000015957	Ras homolog family member Ub.	Uncharacterized protein.	0.531
LOC109996772	LOC110003296	ENSLBEP00000035122	ENSLBEP00000030398	Ras homolog family member Ub.	Uncharacterized protein.	0.531
LOC110003296	CDC42	ENSLBEP00000030398	ENSLBEP00000014221	Uncharacterized protein.	Cell division cycle 42.	0.816