(29 nodes) Sarcoplasmic reticulum membrane network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RYR2	Uncharacterized protein. (4797 aa)
	srl	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (483 aa)
	atp2a2	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1031 aa)
	tmem38a	Transmembrane protein 38A. (290 aa)
	LOC109987094	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1042 aa)
	atp2a3	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1004 aa)
	akap6	Uncharacterized protein. (1080 aa)
	cherp	Calcium homeostasis endoplasmic reticulum protein. (775 aa)
	LOC109995368	Nitric oxide synthase 1 (neuronal) adaptor protein b. (519 aa)
	LOC109992380	Kelch-like family member 41b. (605 aa)
	ENSLBEP00000013648	Ins145_P3_rec domain-containing protein. (146 aa)
	pln	Si:ch211-270g19.5. (53 aa)
	LOC109987106	Peptidylprolyl isomerase. (109 aa)
	SRL	Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (463 aa)
	atp2a1	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (996 aa)
	ryr3	Ryanodine receptor 3. (4267 aa)
	ENSLBEP00000019516	PID domain-containing protein. (359 aa)
	klhl41	Kelch-like family member 41a. (598 aa)
	LOC109995464	Ryanodine receptor 1b (skeletal). (4954 aa)
	ENSLBEP00000024500	annotation not available (146 aa)
	LOC110003066	Uncharacterized protein. (229 aa)
	LOC109987903	Ryanodine receptor 2b (cardiac). (3910 aa)
	LOC109985128	Peptidylprolyl isomerase. (108 aa)
	ENSLBEP00000028187	Asp-B-Hydro_N domain-containing protein. (203 aa)
	LOC109987843	Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (995 aa)
	fkbp1b	Peptidylprolyl isomerase. (108 aa)
	LOC109995599	Receptor expression-enhancing protein. (192 aa)
	RYR3	Ryanodine receptor 3. (4726 aa)
	LOC109984439	Si:dkey-34e4.1. (657 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000013648	ENSLBEP00000028187	ENSLBEP00000013648	ENSLBEP00000028187	Ins145_P3_rec domain-containing protein.	Asp-B-Hydro_N domain-containing protein.	0.721
ENSLBEP00000013648	LOC109985128	ENSLBEP00000013648	ENSLBEP00000027074	Ins145_P3_rec domain-containing protein.	Peptidylprolyl isomerase.	0.820
ENSLBEP00000013648	LOC109987106	ENSLBEP00000013648	ENSLBEP00000017817	Ins145_P3_rec domain-containing protein.	Peptidylprolyl isomerase.	0.820
ENSLBEP00000013648	akap6	ENSLBEP00000013648	ENSLBEP00000007119	Ins145_P3_rec domain-containing protein.	Uncharacterized protein.	0.428
ENSLBEP00000013648	fkbp1b	ENSLBEP00000013648	ENSLBEP00000032732	Ins145_P3_rec domain-containing protein.	Peptidylprolyl isomerase.	0.820
ENSLBEP00000019516	LOC109984439	ENSLBEP00000019516	ENSLBEP00000032959	PID domain-containing protein.	Si:dkey-34e4.1.	0.851
ENSLBEP00000019516	LOC109995368	ENSLBEP00000019516	ENSLBEP00000012778	PID domain-containing protein.	Nitric oxide synthase 1 (neuronal) adaptor protein b.	0.853
ENSLBEP00000024500	ENSLBEP00000028187	ENSLBEP00000024500	ENSLBEP00000028187	annotation not available	Asp-B-Hydro_N domain-containing protein.	0.721
ENSLBEP00000024500	LOC109985128	ENSLBEP00000024500	ENSLBEP00000027074	annotation not available	Peptidylprolyl isomerase.	0.820
ENSLBEP00000024500	LOC109987106	ENSLBEP00000024500	ENSLBEP00000017817	annotation not available	Peptidylprolyl isomerase.	0.820
ENSLBEP00000024500	akap6	ENSLBEP00000024500	ENSLBEP00000007119	annotation not available	Uncharacterized protein.	0.428
ENSLBEP00000024500	fkbp1b	ENSLBEP00000024500	ENSLBEP00000032732	annotation not available	Peptidylprolyl isomerase.	0.820
ENSLBEP00000028187	ENSLBEP00000013648	ENSLBEP00000028187	ENSLBEP00000013648	Asp-B-Hydro_N domain-containing protein.	Ins145_P3_rec domain-containing protein.	0.721
ENSLBEP00000028187	ENSLBEP00000024500	ENSLBEP00000028187	ENSLBEP00000024500	Asp-B-Hydro_N domain-containing protein.	annotation not available	0.721
ENSLBEP00000028187	LOC109985128	ENSLBEP00000028187	ENSLBEP00000027074	Asp-B-Hydro_N domain-containing protein.	Peptidylprolyl isomerase.	0.406
ENSLBEP00000028187	LOC109987106	ENSLBEP00000028187	ENSLBEP00000017817	Asp-B-Hydro_N domain-containing protein.	Peptidylprolyl isomerase.	0.406
ENSLBEP00000028187	LOC109987903	ENSLBEP00000028187	ENSLBEP00000025897	Asp-B-Hydro_N domain-containing protein.	Ryanodine receptor 2b (cardiac).	0.721
ENSLBEP00000028187	LOC109995464	ENSLBEP00000028187	ENSLBEP00000023397	Asp-B-Hydro_N domain-containing protein.	Ryanodine receptor 1b (skeletal).	0.721
ENSLBEP00000028187	RYR2	ENSLBEP00000028187	ENSLBEP00000037907	Asp-B-Hydro_N domain-containing protein.	Uncharacterized protein.	0.721
ENSLBEP00000028187	RYR3	ENSLBEP00000028187	ENSLBEP00000035716	Asp-B-Hydro_N domain-containing protein.	Ryanodine receptor 3.	0.721