41 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lamb3	Uncharacterized protein. (1157 aa)
	LOC109978841	Laminin N-terminal domain-containing protein. (314 aa)
	LOC109998569	C-mer proto-oncogene tyrosine kinase a. (901 aa)
	akip1	A kinase (PRKA) interacting protein 1. (174 aa)
	ILK	Integrin linked kinase. (452 aa)
	ENSLBEP00000005998	Uncharacterized protein. (1385 aa)
	fzd4	Frizzled class receptor 4; Belongs to the G-protein coupled receptor Fz/Smo family. (530 aa)
	efna1	Ephrin-A1b; Belongs to the ephrin family. (234 aa)
	LOC109985416	Fermitin family member 3b. (632 aa)
	LOC109981964	Neuropilin; Belongs to the neuropilin family. (874 aa)
	bves	Blood vessel epicardial substance. (304 aa)
	radil	Ras association and DIL domains. (1108 aa)
	ntn4	Netrin 4. (626 aa)
	LOC109996624	Eph receptor B3a. (895 aa)
	LOC110004195	Uncharacterized protein. (638 aa)
	vamp3	V-SNARE coiled-coil homology domain-containing protein. (136 aa)
	LOC109992767	Parvin, alpha a. (372 aa)
	ENSLBEP00000037570	Dilute domain-containing protein. (312 aa)
	ap1ar	Adaptor related protein complex 1 associated regulatory protein. (304 aa)
	LOC109988705	Ephrin-A1a; Belongs to the ephrin family. (227 aa)
	ntng1	Netrin g1a. (546 aa)
	tyro3	TYRO3 protein tyrosine kinase. (652 aa)
	LOC109984480	Netrin G2. (633 aa)
	ENSLBEP00000029990	Uncharacterized protein. (895 aa)
	kif14	Kinesin family member 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1184 aa)
	LOC109987373	Fibronectin 1a. (2192 aa)
	ENSLBEP00000029121	Uncharacterized protein. (540 aa)
	LOC109985095	Laminin, beta 2-like. (1791 aa)
	lamb2	Laminin, beta 2 (laminin S). (1785 aa)
	ephb3	Uncharacterized protein. (985 aa)
	AXL	AXL receptor tyrosine kinase. (936 aa)
	LOC109975802	G_PROTEIN_RECEP_F2_4 domain-containing protein; Belongs to the G-protein coupled receptor Fz/Smo family. (373 aa)
	LAMB1	Laminin, beta 1a. (1791 aa)
	LOC110001690	Uncharacterized protein. (1436 aa)
	parvb	Parvin, beta. (368 aa)
	parvg	Parvin, gamma. (297 aa)
	LOC109988384	Uncharacterized protein. (452 aa)
	LOC109977228	Protein kinase domain-containing protein. (257 aa)
	LOC109975356	Vav 3 guanine nucleotide exchange factor b. (456 aa)
	LOC109989134	Netrin g2a. (579 aa)
	LOC109983928	Uncharacterized protein. (658 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AXL	ENSLBEP00000005998	ENSLBEP00000022955	ENSLBEP00000005998	AXL receptor tyrosine kinase.	Uncharacterized protein.	0.420
AXL	LOC109988705	ENSLBEP00000022955	ENSLBEP00000035433	AXL receptor tyrosine kinase.	Ephrin-A1a; Belongs to the ephrin family.	0.405
AXL	efna1	ENSLBEP00000022955	ENSLBEP00000006859	AXL receptor tyrosine kinase.	Ephrin-A1b; Belongs to the ephrin family.	0.405
ENSLBEP00000005998	AXL	ENSLBEP00000005998	ENSLBEP00000022955	Uncharacterized protein.	AXL receptor tyrosine kinase.	0.420
ENSLBEP00000005998	ENSLBEP00000029121	ENSLBEP00000005998	ENSLBEP00000029121	Uncharacterized protein.	Uncharacterized protein.	0.849
ENSLBEP00000005998	LAMB1	ENSLBEP00000005998	ENSLBEP00000015618	Uncharacterized protein.	Laminin, beta 1a.	0.849
ENSLBEP00000005998	LOC109983928	ENSLBEP00000005998	ENSLBEP00000020613	Uncharacterized protein.	Uncharacterized protein.	0.414
ENSLBEP00000005998	LOC109985095	ENSLBEP00000005998	ENSLBEP00000026840	Uncharacterized protein.	Laminin, beta 2-like.	0.849
ENSLBEP00000005998	LOC109987373	ENSLBEP00000005998	ENSLBEP00000029520	Uncharacterized protein.	Fibronectin 1a.	0.542
ENSLBEP00000005998	LOC109998569	ENSLBEP00000005998	ENSLBEP00000003761	Uncharacterized protein.	C-mer proto-oncogene tyrosine kinase a.	0.420
ENSLBEP00000005998	LOC110004195	ENSLBEP00000005998	ENSLBEP00000014479	Uncharacterized protein.	Uncharacterized protein.	0.414
ENSLBEP00000005998	lamb2	ENSLBEP00000005998	ENSLBEP00000026645	Uncharacterized protein.	Laminin, beta 2 (laminin S).	0.849
ENSLBEP00000005998	lamb3	ENSLBEP00000005998	ENSLBEP00000026141	Uncharacterized protein.	Uncharacterized protein.	0.921
ENSLBEP00000005998	ntn4	ENSLBEP00000005998	ENSLBEP00000011387	Uncharacterized protein.	Netrin 4.	0.414
ENSLBEP00000029121	ENSLBEP00000005998	ENSLBEP00000029121	ENSLBEP00000005998	Uncharacterized protein.	Uncharacterized protein.	0.849
ENSLBEP00000029121	LAMB1	ENSLBEP00000029121	ENSLBEP00000015618	Uncharacterized protein.	Laminin, beta 1a.	0.828
ENSLBEP00000029121	LOC109975356	ENSLBEP00000029121	ENSLBEP00000020235	Uncharacterized protein.	Vav 3 guanine nucleotide exchange factor b.	0.427
ENSLBEP00000029121	lamb2	ENSLBEP00000029121	ENSLBEP00000026645	Uncharacterized protein.	Laminin, beta 2 (laminin S).	0.723
ENSLBEP00000029121	lamb3	ENSLBEP00000029121	ENSLBEP00000026141	Uncharacterized protein.	Uncharacterized protein.	0.838
ENSLBEP00000029121	ntng1	ENSLBEP00000029121	ENSLBEP00000033193	Uncharacterized protein.	Netrin g1a.	0.427