(14 nodes) Pattern recognition receptor activity network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nod1	Nucleotide-binding oligomerization domain containing 1. (941 aa)
	scarb1	Scavenger receptor class B, member 1; Belongs to the CD36 family. (429 aa)
	LOC110004126	Peptidoglycan recognition protein 6. (476 aa)
	tnfaip8l2	Tumor necrosis factor, alpha-induced protein 8-like 2b. (204 aa)
	nod2	Nucleotide-binding oligomerization domain containing 2. (982 aa)
	TLR8	Toll like receptor 8. (1022 aa)
	LOC109984366	Toll-like receptor 7; Belongs to the Toll-like receptor family. (1053 aa)
	ENSLBEP00000019973	NACHT domain-containing protein. (1428 aa)
	LOC109985035	Collectin sub-family member 12. (769 aa)
	LOC109980354	Uncharacterized protein; Belongs to the CD36 family. (430 aa)
	ENSLBEP00000011687	PGRP domain-containing protein. (160 aa)
	LOC110006067	Uncharacterized protein. (483 aa)
	LOC110000366	Peptidoglycan recognition protein 5. (167 aa)
	ENSLBEP00000001202	Platelet-activating factor receptor; Belongs to the G-protein coupled receptor 1 family. (399 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000011687	LOC110000366	ENSLBEP00000011687	ENSLBEP00000001551	PGRP domain-containing protein.	Peptidoglycan recognition protein 5.	0.875
ENSLBEP00000011687	LOC110004126	ENSLBEP00000011687	ENSLBEP00000035977	PGRP domain-containing protein.	Peptidoglycan recognition protein 6.	0.859
ENSLBEP00000019973	nod1	ENSLBEP00000019973	ENSLBEP00000029926	NACHT domain-containing protein.	Nucleotide-binding oligomerization domain containing 1.	0.659
LOC110000366	ENSLBEP00000011687	ENSLBEP00000001551	ENSLBEP00000011687	Peptidoglycan recognition protein 5.	PGRP domain-containing protein.	0.875
LOC110000366	LOC110006067	ENSLBEP00000001551	ENSLBEP00000008858	Peptidoglycan recognition protein 5.	Uncharacterized protein.	0.876
LOC110004126	ENSLBEP00000011687	ENSLBEP00000035977	ENSLBEP00000011687	Peptidoglycan recognition protein 6.	PGRP domain-containing protein.	0.859
LOC110004126	LOC110006067	ENSLBEP00000035977	ENSLBEP00000008858	Peptidoglycan recognition protein 6.	Uncharacterized protein.	0.857
LOC110006067	LOC110000366	ENSLBEP00000008858	ENSLBEP00000001551	Uncharacterized protein.	Peptidoglycan recognition protein 5.	0.876
LOC110006067	LOC110004126	ENSLBEP00000008858	ENSLBEP00000035977	Uncharacterized protein.	Peptidoglycan recognition protein 6.	0.857
nod1	ENSLBEP00000019973	ENSLBEP00000029926	ENSLBEP00000019973	Nucleotide-binding oligomerization domain containing 1.	NACHT domain-containing protein.	0.659
nod1	nod2	ENSLBEP00000029926	ENSLBEP00000030762	Nucleotide-binding oligomerization domain containing 1.	Nucleotide-binding oligomerization domain containing 2.	0.671
nod2	nod1	ENSLBEP00000030762	ENSLBEP00000029926	Nucleotide-binding oligomerization domain containing 2.	Nucleotide-binding oligomerization domain containing 1.	0.671