(7 nodes) TORC2 signaling network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SYAP1	Synapse associated protein 1. (354 aa)
	mapkap1	MAPK associated protein 1. (533 aa)
	prr5l	Uncharacterized protein. (402 aa)
	PRR5	Proline rich 5. (468 aa)
	LOC110000703	Uncharacterized protein. (1782 aa)
	LOC109982373	Synapse associated protein 1. (368 aa)
	LOC109983334	RPTOR independent companion of MTOR, complex 2 a. (1157 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109983334	LOC110000703	ENSLBEP00000030084	ENSLBEP00000025195	RPTOR independent companion of MTOR, complex 2 a.	Uncharacterized protein.	0.889
LOC109983334	PRR5	ENSLBEP00000030084	ENSLBEP00000020322	RPTOR independent companion of MTOR, complex 2 a.	Proline rich 5.	0.869
LOC109983334	mapkap1	ENSLBEP00000030084	ENSLBEP00000031496	RPTOR independent companion of MTOR, complex 2 a.	MAPK associated protein 1.	0.995
LOC109983334	prr5l	ENSLBEP00000030084	ENSLBEP00000005088	RPTOR independent companion of MTOR, complex 2 a.	Uncharacterized protein.	0.487
LOC110000703	LOC109983334	ENSLBEP00000025195	ENSLBEP00000030084	Uncharacterized protein.	RPTOR independent companion of MTOR, complex 2 a.	0.889
LOC110000703	PRR5	ENSLBEP00000025195	ENSLBEP00000020322	Uncharacterized protein.	Proline rich 5.	0.862
LOC110000703	mapkap1	ENSLBEP00000025195	ENSLBEP00000031496	Uncharacterized protein.	MAPK associated protein 1.	0.995
LOC110000703	prr5l	ENSLBEP00000025195	ENSLBEP00000005088	Uncharacterized protein.	Uncharacterized protein.	0.487
PRR5	LOC109983334	ENSLBEP00000020322	ENSLBEP00000030084	Proline rich 5.	RPTOR independent companion of MTOR, complex 2 a.	0.869
PRR5	LOC110000703	ENSLBEP00000020322	ENSLBEP00000025195	Proline rich 5.	Uncharacterized protein.	0.862
PRR5	mapkap1	ENSLBEP00000020322	ENSLBEP00000031496	Proline rich 5.	MAPK associated protein 1.	0.849
mapkap1	LOC109983334	ENSLBEP00000031496	ENSLBEP00000030084	MAPK associated protein 1.	RPTOR independent companion of MTOR, complex 2 a.	0.995
mapkap1	LOC110000703	ENSLBEP00000031496	ENSLBEP00000025195	MAPK associated protein 1.	Uncharacterized protein.	0.995
mapkap1	PRR5	ENSLBEP00000031496	ENSLBEP00000020322	MAPK associated protein 1.	Proline rich 5.	0.849
mapkap1	prr5l	ENSLBEP00000031496	ENSLBEP00000005088	MAPK associated protein 1.	Uncharacterized protein.	0.560
prr5l	LOC109983334	ENSLBEP00000005088	ENSLBEP00000030084	Uncharacterized protein.	RPTOR independent companion of MTOR, complex 2 a.	0.487
prr5l	LOC110000703	ENSLBEP00000005088	ENSLBEP00000025195	Uncharacterized protein.	Uncharacterized protein.	0.487
prr5l	mapkap1	ENSLBEP00000005088	ENSLBEP00000031496	Uncharacterized protein.	MAPK associated protein 1.	0.560