26 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109980331	Uncharacterized protein. (371 aa)
	LOC109980730	Period circadian clock 1b. (1500 aa)
	opn5	Opsin 5; Belongs to the G-protein coupled receptor 1 family. (356 aa)
	ENSLBEP00000036025	Uncharacterized protein. (384 aa)
	LOC109997923	F-box and leucine-rich repeat protein 3a. (445 aa)
	ENSLBEP00000032859	Opsin 8, group member a; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (313 aa)
	LOC109989757	Opsin 8, group member b; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (351 aa)
	LOC109988168	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)
	LOC109983879	Basic helix-loop-helix family, member e40. (403 aa)
	LOC109982275	Si:ch1073-390k14.1. (815 aa)
	BHLHE40	Basic helix-loop-helix family member e40. (419 aa)
	LOC109991432	Period circadian clock 2. (1477 aa)
	LOC109977327	Opsin 8, group member b; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (295 aa)
	fbxl22	F-box and leucine-rich repeat protein 22. (228 aa)
	ENSLBEP00000018282	CREB regulated transcription coactivator 1a. (380 aa)
	LOC109985522	F-box domain-containing protein. (435 aa)
	LOC109984249	Period circadian clock 3. (1278 aa)
	PER2	Period circadian regulator 2. (1551 aa)
	LOC109989699	Cryptochrome circadian regulator 2. (673 aa)
	LOC110002295	Cryptochrome circadian regulator 5. (521 aa)
	LOC109996375	Cryptochrome circadian regulator 3a. (678 aa)
	LOC109993499	F-box and leucine-rich repeat protein 3, like. (432 aa)
	LOC109992897	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (342 aa)
	LOC109976765	F-box and leucine-rich repeat protein 3a. (439 aa)
	CRTC1	CREB regulated transcription coactivator 1b. (603 aa)
	ppp1cc	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BHLHE40	LOC109980730	ENSLBEP00000024492	ENSLBEP00000038014	Basic helix-loop-helix family member e40.	Period circadian clock 1b.	0.552
BHLHE40	LOC109984249	ENSLBEP00000024492	ENSLBEP00000015149	Basic helix-loop-helix family member e40.	Period circadian clock 3.	0.534
BHLHE40	LOC109991432	ENSLBEP00000024492	ENSLBEP00000023789	Basic helix-loop-helix family member e40.	Period circadian clock 2.	0.534
BHLHE40	PER2	ENSLBEP00000024492	ENSLBEP00000014231	Basic helix-loop-helix family member e40.	Period circadian regulator 2.	0.534
CRTC1	LOC109988168	ENSLBEP00000002928	ENSLBEP00000029672	CREB regulated transcription coactivator 1b.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.521
CRTC1	LOC109992897	ENSLBEP00000002928	ENSLBEP00000004922	CREB regulated transcription coactivator 1b.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.521
CRTC1	ppp1cc	ENSLBEP00000002928	ENSLBEP00000001685	CREB regulated transcription coactivator 1b.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.521
ENSLBEP00000018282	LOC109988168	ENSLBEP00000018282	ENSLBEP00000029672	CREB regulated transcription coactivator 1a.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.521
ENSLBEP00000018282	LOC109992897	ENSLBEP00000018282	ENSLBEP00000004922	CREB regulated transcription coactivator 1a.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.521
ENSLBEP00000018282	ppp1cc	ENSLBEP00000018282	ENSLBEP00000001685	CREB regulated transcription coactivator 1a.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.521
ENSLBEP00000036025	LOC109982275	ENSLBEP00000036025	ENSLBEP00000024994	Uncharacterized protein.	Si:ch1073-390k14.1.	0.527
ENSLBEP00000036025	LOC109989699	ENSLBEP00000036025	ENSLBEP00000010036	Uncharacterized protein.	Cryptochrome circadian regulator 2.	0.527
ENSLBEP00000036025	LOC109996375	ENSLBEP00000036025	ENSLBEP00000007881	Uncharacterized protein.	Cryptochrome circadian regulator 3a.	0.527
ENSLBEP00000036025	LOC110002295	ENSLBEP00000036025	ENSLBEP00000008813	Uncharacterized protein.	Cryptochrome circadian regulator 5.	0.527
LOC109976765	LOC109982275	ENSLBEP00000003690	ENSLBEP00000024994	F-box and leucine-rich repeat protein 3a.	Si:ch1073-390k14.1.	0.556
LOC109976765	LOC109989699	ENSLBEP00000003690	ENSLBEP00000010036	F-box and leucine-rich repeat protein 3a.	Cryptochrome circadian regulator 2.	0.556
LOC109976765	LOC109996375	ENSLBEP00000003690	ENSLBEP00000007881	F-box and leucine-rich repeat protein 3a.	Cryptochrome circadian regulator 3a.	0.556
LOC109976765	LOC110002295	ENSLBEP00000003690	ENSLBEP00000008813	F-box and leucine-rich repeat protein 3a.	Cryptochrome circadian regulator 5.	0.555
LOC109980331	LOC109982275	ENSLBEP00000013095	ENSLBEP00000024994	Uncharacterized protein.	Si:ch1073-390k14.1.	0.527
LOC109980331	LOC109989699	ENSLBEP00000013095	ENSLBEP00000010036	Uncharacterized protein.	Cryptochrome circadian regulator 2.	0.527