(88 nodes) Dendritic spine network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109992828	Fragile X mental retardation, autosomal homolog 2. (677 aa)
	dagla	Diacylglycerol lipase, alpha. (1090 aa)
	LOC109985945	Si:dkey-91m11.5. (1274 aa)
	ENSLBEP00000000519	Uncharacterized protein. (1002 aa)
	ENSLBEP00000000453	SH3 and multiple ankyrin repeat domains 3a. (1322 aa)
	LOC109983093	Nerve growth factor receptor a (TNFR superfamily, member 16). (326 aa)
	TANC2	Tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2. (2083 aa)
	LOC109981859	Protein phosphatase 1, regulatory subunit 9Bb. (823 aa)
	ENSLBEP00000036923	Uncharacterized protein. (616 aa)
	SHISA6	Shisa family member 6. (563 aa)
	LOC110001447	BAI1 associated protein 2. (516 aa)
	LOC109984498	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (1005 aa)
	LOC109993319	Eukaryotic elongation factor 2 kinase. (709 aa)
	dock10	Dedicator of cytokinesis 10; Belongs to the DOCK family. (2035 aa)
	shisa9	Shisa family member 9a. (402 aa)
	APP	Amyloid beta precursor protein. (646 aa)
	ENSLBEP00000033183	Uncharacterized protein. (230 aa)
	LOC109998953	Uncharacterized protein. (905 aa)
	usp8	Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family. (1085 aa)
	USP50	Ubiquitin specific peptidase 50; Belongs to the peptidase C19 family. (341 aa)
	LOC109990369	Shisa family member 9b. (378 aa)
	myl7	Myosin, light chain 7, regulatory. (172 aa)
	gper1	G protein-coupled estrogen receptor 1; Belongs to the G-protein coupled receptor 1 family. (366 aa)
	ENSLBEP00000031341	BTB domain-containing protein. (106 aa)
	ENSLBEP00000030761	Protein phosphatase 1, regulatory subunit 9A. (738 aa)
	ENSLBEP00000030697	FERM_N_2 domain-containing protein. (103 aa)
	ENSLBEP00000030539	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (524 aa)
	ENSLBEP00000030475	Focal_AT domain-containing protein. (115 aa)
	LOC110003296	Uncharacterized protein. (138 aa)
	ENSLBEP00000030320	Proline-rich transmembrane protein 2. (189 aa)
	LOC110003967	Uncharacterized protein. (147 aa)
	LOC109994433	Cytoplasmic polyadenylation element binding protein 4a. (747 aa)
	LOC109996693	Leucine zipper, putative tumor suppressor 1. (647 aa)
	LOC109994083	BAI1-associated protein 2a. (556 aa)
	LOC109988061	Nerve growth factor receptor b. (432 aa)
	ABR	ABR activator of RhoGEF and GTPase. (1175 aa)
	NRGN	Neurogranin. (65 aa)
	LOC109982756	Abhydrolase domain containing 17A. (321 aa)
	p2rx3	P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel. (390 aa)
	ENSLBEP00000025365	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (253 aa)
	LOC110003858	Potassium voltage-gated channel, Shal-related subfamily, member 1; Belongs to the potassium channel family. (610 aa)
	LOC109996112	Potassium voltage-gated channel, Shal-related subfamily, member 3; Belongs to the potassium channel family. (629 aa)
	LOC109997089	Protein phosphatase 1 regulatory subunit 9A-like A. (1452 aa)
	LOC109985669	Amyloid beta (A4) precursor protein-binding, family A, member 1b. (1138 aa)
	LOC110005173	Nuclear receptor subfamily 1, group d, member 1. (588 aa)
	ENSLBEP00000023069	Uncharacterized protein. (86 aa)
	abhd17c	Abhydrolase domain containing 17C. (294 aa)
	ENSLBEP00000021865	Shisa family member 7a. (368 aa)
	pdlim4	PDZ and LIM domain 4. (404 aa)
	gpm6a	Glycoprotein M6Aa. (278 aa)
	LOC110002623	Amyloid beta (A4) precursor protein-binding, family A, member 2a. (892 aa)
	LOC109998752	Homer scaffold protein 1b. (363 aa)
	LOC109975783-2	Fragile X mental retardation, autosomal homolog 1. (743 aa)
	fmr1	Fragile X mental retardation 1. (583 aa)
	LOC109981031	Glutamate receptor, ionotropic, AMPA 1a. (920 aa)
	ENSLBEP00000016589	Uncharacterized protein. (184 aa)
	srgap2	SLIT-ROBO Rho GTPase activating protein 2. (1130 aa)
	ENSLBEP00000016239	Uncharacterized protein. (272 aa)
	LOC109995395	Uncharacterized protein. (191 aa)
	LOC110002890	Uncharacterized protein. (867 aa)
	LOC109975783	Uncharacterized protein. (699 aa)
	LOC110004060	BTB domain-containing protein; Belongs to the potassium channel family. (618 aa)
	LOC109996473	Uncharacterized protein. (882 aa)
	CDC42	Cell division cycle 42. (203 aa)
	ENSLBEP00000014218	Uncharacterized protein. (274 aa)
	LOC109994148	Cell division cycle 42. (191 aa)
	APBA1	Amyloid beta precursor protein binding family A member 1. (936 aa)
	palm	Paralemmin 1b. (229 aa)
	LOC109977686	Uncharacterized protein. (515 aa)
	SYNDIG1	Synapse differentiation inducing 1. (258 aa)
	PPP1R9B	Protein phosphatase 1 regulatory subunit 9B. (888 aa)
	LOC109999319	Uncharacterized protein. (923 aa)
	ENSLBEP00000009580	Uncharacterized protein. (386 aa)
	atp6ap2	ATPase H+ transporting accessory protein 2. (362 aa)
	abhd17b	Abhydrolase domain containing 17B. (288 aa)
	LOC109984175	Alsin Rho guanine nucleotide exchange factor ALS2 b. (1586 aa)
	shank1	SH3 and multiple ankyrin repeat domains 1. (840 aa)
	cttnbp2	Cortactin binding protein 2. (1383 aa)
	LOC109987111	BCR activator of RhoGEF and GTPase. (1388 aa)
	ENSLBEP00000003918	Potassium voltage-gated channel, Shal-related subfamily, member 2; Belongs to the potassium channel family. (720 aa)
	LOC109981486	Glutamate receptor, ionotropic, AMPA 3a. (886 aa)
	LOC109988188	Uncharacterized protein. (278 aa)
	LOC109984065	Peptidase_S9 domain-containing protein. (369 aa)
	HOMER1	Homer scaffold protein 1. (356 aa)
	ptk2b	Protein tyrosine kinase 2 beta, b; Belongs to the protein kinase superfamily. Tyr protein kinase family. (993 aa)
	shank2	SH3 and multiple ankyrin repeat domains 2a. (1805 aa)
	LOC109982996	Amyloid beta (A4) precursor protein-binding, family A, member 2b. (996 aa)
	LOC110001417	Amyloid beta precursor protein binding family A member 3. (721 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABR	CDC42	ENSLBEP00000027680	ENSLBEP00000014221	ABR activator of RhoGEF and GTPase.	Cell division cycle 42.	0.639
ABR	LOC109994148	ENSLBEP00000027680	ENSLBEP00000013739	ABR activator of RhoGEF and GTPase.	Cell division cycle 42.	0.639
ABR	LOC109995395	ENSLBEP00000027680	ENSLBEP00000015957	ABR activator of RhoGEF and GTPase.	Uncharacterized protein.	0.574
ABR	LOC110003296	ENSLBEP00000027680	ENSLBEP00000030398	ABR activator of RhoGEF and GTPase.	Uncharacterized protein.	0.574
APBA1	APP	ENSLBEP00000012785	ENSLBEP00000033207	Amyloid beta precursor protein binding family A member 1.	Amyloid beta precursor protein.	0.755
APP	APBA1	ENSLBEP00000033207	ENSLBEP00000012785	Amyloid beta precursor protein.	Amyloid beta precursor protein binding family A member 1.	0.755
APP	LOC109982996	ENSLBEP00000033207	ENSLBEP00000001408	Amyloid beta precursor protein.	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	0.755
APP	LOC109983093	ENSLBEP00000033207	ENSLBEP00000010406	Amyloid beta precursor protein.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.766
APP	LOC109985669	ENSLBEP00000033207	ENSLBEP00000023668	Amyloid beta precursor protein.	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	0.755
APP	LOC110001417	ENSLBEP00000033207	ENSLBEP00000001249	Amyloid beta precursor protein.	Amyloid beta precursor protein binding family A member 3.	0.746
APP	LOC110002623	ENSLBEP00000033207	ENSLBEP00000019981	Amyloid beta precursor protein.	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	0.755
APP	fmr1	ENSLBEP00000033207	ENSLBEP00000018703	Amyloid beta precursor protein.	Fragile X mental retardation 1.	0.436
CDC42	ABR	ENSLBEP00000014221	ENSLBEP00000027680	Cell division cycle 42.	ABR activator of RhoGEF and GTPase.	0.639
CDC42	ENSLBEP00000000453	ENSLBEP00000014221	ENSLBEP00000000453	Cell division cycle 42.	SH3 and multiple ankyrin repeat domains 3a.	0.853
CDC42	ENSLBEP00000000519	ENSLBEP00000014221	ENSLBEP00000000519	Cell division cycle 42.	Uncharacterized protein.	0.690
CDC42	ENSLBEP00000009580	ENSLBEP00000014221	ENSLBEP00000009580	Cell division cycle 42.	Uncharacterized protein.	0.657
CDC42	ENSLBEP00000023069	ENSLBEP00000014221	ENSLBEP00000023069	Cell division cycle 42.	Uncharacterized protein.	0.558
CDC42	ENSLBEP00000030475	ENSLBEP00000014221	ENSLBEP00000030475	Cell division cycle 42.	Focal_AT domain-containing protein.	0.572
CDC42	ENSLBEP00000030539	ENSLBEP00000014221	ENSLBEP00000030539	Cell division cycle 42.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.573
CDC42	ENSLBEP00000030697	ENSLBEP00000014221	ENSLBEP00000030697	Cell division cycle 42.	FERM_N_2 domain-containing protein.	0.572