(9 nodes) Telomere maintenance in response to DNA damage network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dclre1b	DNA cross-link repair 1B. (612 aa)
	LOC109989819	Uncharacterized protein. (448 aa)
	ENSLBEP00000006873	Uncharacterized protein. (125 aa)
	ENSLBEP00000006855	HTH myb-type domain-containing protein. (181 aa)
	dclre1a	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae). (871 aa)
	rif1	Replication timing regulatory factor 1. (2650 aa)
	dclre1c	DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae). (671 aa)
	LOC109977677	Uncharacterized protein. (277 aa)
	LOC109990953	Uncharacterized protein. (277 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000006855	LOC109989819	ENSLBEP00000006855	ENSLBEP00000009703	HTH myb-type domain-containing protein.	Uncharacterized protein.	0.979
ENSLBEP00000006855	dclre1a	ENSLBEP00000006855	ENSLBEP00000005808	HTH myb-type domain-containing protein.	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae).	0.855
ENSLBEP00000006855	dclre1b	ENSLBEP00000006855	ENSLBEP00000020248	HTH myb-type domain-containing protein.	DNA cross-link repair 1B.	0.855
ENSLBEP00000006873	LOC109989819	ENSLBEP00000006873	ENSLBEP00000009703	Uncharacterized protein.	Uncharacterized protein.	0.986
ENSLBEP00000006873	dclre1a	ENSLBEP00000006873	ENSLBEP00000005808	Uncharacterized protein.	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae).	0.920
ENSLBEP00000006873	dclre1b	ENSLBEP00000006873	ENSLBEP00000020248	Uncharacterized protein.	DNA cross-link repair 1B.	0.972
LOC109989819	ENSLBEP00000006855	ENSLBEP00000009703	ENSLBEP00000006855	Uncharacterized protein.	HTH myb-type domain-containing protein.	0.979
LOC109989819	ENSLBEP00000006873	ENSLBEP00000009703	ENSLBEP00000006873	Uncharacterized protein.	Uncharacterized protein.	0.986
dclre1a	ENSLBEP00000006855	ENSLBEP00000005808	ENSLBEP00000006855	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae).	HTH myb-type domain-containing protein.	0.855
dclre1a	ENSLBEP00000006873	ENSLBEP00000005808	ENSLBEP00000006873	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae).	Uncharacterized protein.	0.920
dclre1a	dclre1b	ENSLBEP00000005808	ENSLBEP00000020248	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae).	DNA cross-link repair 1B.	0.699
dclre1b	ENSLBEP00000006855	ENSLBEP00000020248	ENSLBEP00000006855	DNA cross-link repair 1B.	HTH myb-type domain-containing protein.	0.855
dclre1b	ENSLBEP00000006873	ENSLBEP00000020248	ENSLBEP00000006873	DNA cross-link repair 1B.	Uncharacterized protein.	0.972
dclre1b	dclre1a	ENSLBEP00000020248	ENSLBEP00000005808	DNA cross-link repair 1B.	DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae).	0.699
dclre1c	rif1	ENSLBEP00000029203	ENSLBEP00000030714	DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae).	Replication timing regulatory factor 1.	0.678
rif1	dclre1c	ENSLBEP00000030714	ENSLBEP00000029203	Replication timing regulatory factor 1.	DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae).	0.678