(26 nodes) Response to exogenous dsRNA network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC110005080	Mitochondrial E3 ubiquitin protein ligase 1b. (352 aa)
	LOC109990113	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (154 aa)
	ENSLBEP00000011609	RING-type domain-containing protein. (316 aa)
	ddx1	DEAD (Asp-Glu-Ala-Asp) box helicase 1. (648 aa)
	ripk2	Receptor-interacting serine-threonine kinase 2. (569 aa)
	LOC109994614	Raftlin, lipid raft linker 1a. (687 aa)
	LOC109983659	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (308 aa)
	ifih1	Interferon induced with helicase C domain 1. (990 aa)
	rftn1	Uncharacterized protein. (738 aa)
	ddx21	DEAD (Asp-Glu-Ala-Asp) box helicase 21. (760 aa)
	ENSLBEP00000037844	Uncharacterized protein. (193 aa)
	LOC109981815	Uncharacterized protein. (184 aa)
	LOC109996784	Si:dkey-202g17.3. (504 aa)
	ENSLBEP00000035151	Uncharacterized protein. (184 aa)
	LOC109989015	Interferon regulatory factor 3. (465 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1065 aa)
	ENSLBEP00000031050	Class II, major histocompatibility complex, transactivator. (821 aa)
	rftn2	Raftlin family member 2. (428 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (318 aa)
	LOC109998842	Solute carrier family 3 member 2b. (527 aa)
	ENSLBEP00000025063	Mitochondrial E3 ubiquitin protein ligase 1. (335 aa)
	LOC109993147	RING-type domain-containing protein. (298 aa)
	card9	CARD domain-containing protein. (470 aa)
	slc3a2	Solute carrier family 3 member 2a. (514 aa)
	LOC109985035	Collectin sub-family member 12. (769 aa)
	pqbp1	Polyglutamine binding protein 1. (225 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000035151	ENSLBEP00000037844	ENSLBEP00000035151	ENSLBEP00000037844	Uncharacterized protein.	Uncharacterized protein.	0.909
ENSLBEP00000035151	LOC109981815	ENSLBEP00000035151	ENSLBEP00000037826	Uncharacterized protein.	Uncharacterized protein.	0.909
ENSLBEP00000035151	LOC109989015	ENSLBEP00000035151	ENSLBEP00000032984	Uncharacterized protein.	Interferon regulatory factor 3.	0.895
ENSLBEP00000037844	ENSLBEP00000035151	ENSLBEP00000037844	ENSLBEP00000035151	Uncharacterized protein.	Uncharacterized protein.	0.909
ENSLBEP00000037844	LOC109989015	ENSLBEP00000037844	ENSLBEP00000032984	Uncharacterized protein.	Interferon regulatory factor 3.	0.847
LOC109981815	ENSLBEP00000035151	ENSLBEP00000037826	ENSLBEP00000035151	Uncharacterized protein.	Uncharacterized protein.	0.909
LOC109981815	LOC109989015	ENSLBEP00000037826	ENSLBEP00000032984	Uncharacterized protein.	Interferon regulatory factor 3.	0.847
LOC109983659	nfkbia	ENSLBEP00000007019	ENSLBEP00000028970	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.843
LOC109983659	ripk2	ENSLBEP00000007019	ENSLBEP00000010906	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Receptor-interacting serine-threonine kinase 2.	0.437
LOC109989015	ENSLBEP00000035151	ENSLBEP00000032984	ENSLBEP00000035151	Interferon regulatory factor 3.	Uncharacterized protein.	0.895
LOC109989015	ENSLBEP00000037844	ENSLBEP00000032984	ENSLBEP00000037844	Interferon regulatory factor 3.	Uncharacterized protein.	0.847
LOC109989015	LOC109981815	ENSLBEP00000032984	ENSLBEP00000037826	Interferon regulatory factor 3.	Uncharacterized protein.	0.847
LOC109989015	card9	ENSLBEP00000032984	ENSLBEP00000021767	Interferon regulatory factor 3.	CARD domain-containing protein.	0.854
LOC109989015	ifih1	ENSLBEP00000032984	ENSLBEP00000006965	Interferon regulatory factor 3.	Interferon induced with helicase C domain 1.	0.760
card9	LOC109989015	ENSLBEP00000021767	ENSLBEP00000032984	CARD domain-containing protein.	Interferon regulatory factor 3.	0.854
card9	ifih1	ENSLBEP00000021767	ENSLBEP00000006965	CARD domain-containing protein.	Interferon induced with helicase C domain 1.	0.426
card9	ripk2	ENSLBEP00000021767	ENSLBEP00000010906	CARD domain-containing protein.	Receptor-interacting serine-threonine kinase 2.	0.900
ddx1	ddx21	ENSLBEP00000011341	ENSLBEP00000001586	DEAD (Asp-Glu-Ala-Asp) box helicase 1.	DEAD (Asp-Glu-Ala-Asp) box helicase 21.	0.651
ddx1	dhx36	ENSLBEP00000011341	ENSLBEP00000031121	DEAD (Asp-Glu-Ala-Asp) box helicase 1.	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	0.728
ddx21	ddx1	ENSLBEP00000001586	ENSLBEP00000011341	DEAD (Asp-Glu-Ala-Asp) box helicase 21.	DEAD (Asp-Glu-Ala-Asp) box helicase 1.	0.651