(10 nodes) Positive T cell selection network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	srf	Serum response factor b. (526 aa)
	ENSLBEP00000016708	Uncharacterized protein. (158 aa)
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2492 aa)
	ptprc	Protein tyrosine phosphatase receptor type C. (1151 aa)
	themis2	Thymocyte selection associated family member 2. (593 aa)
	stk11	Serine/threonine kinase 11; Belongs to the protein kinase superfamily. (438 aa)
	batf	Basic leucine zipper transcription factor, ATF-like. (114 aa)
	il6r	Interleukin 6 receptor. (592 aa)
	SRF	Serum response factor. (278 aa)
	tbx21	T-box transcription factor 21. (616 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000016708	ptprc	ENSLBEP00000016708	ENSLBEP00000036424	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.837
SRF	srf	ENSLBEP00000012673	ENSLBEP00000015093	Serum response factor.	Serum response factor b.	0.844
batf	tbx21	ENSLBEP00000001904	ENSLBEP00000013757	Basic leucine zipper transcription factor, ATF-like.	T-box transcription factor 21.	0.444
mtor	stk11	ENSLBEP00000018404	ENSLBEP00000000386	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	Serine/threonine kinase 11; Belongs to the protein kinase superfamily.	0.778
ptprc	ENSLBEP00000016708	ENSLBEP00000036424	ENSLBEP00000016708	Protein tyrosine phosphatase receptor type C.	Uncharacterized protein.	0.837
ptprc	tbx21	ENSLBEP00000036424	ENSLBEP00000013757	Protein tyrosine phosphatase receptor type C.	T-box transcription factor 21.	0.413
srf	SRF	ENSLBEP00000015093	ENSLBEP00000012673	Serum response factor b.	Serum response factor.	0.844
stk11	mtor	ENSLBEP00000000386	ENSLBEP00000018404	Serine/threonine kinase 11; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.778
tbx21	batf	ENSLBEP00000013757	ENSLBEP00000001904	T-box transcription factor 21.	Basic leucine zipper transcription factor, ATF-like.	0.444
tbx21	ptprc	ENSLBEP00000013757	ENSLBEP00000036424	T-box transcription factor 21.	Protein tyrosine phosphatase receptor type C.	0.413