(19 nodes) Regulation of DNA methylation network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109989024	Glycogen synthase kinase 3 alpha b. (506 aa)
	LOC109987121	POU domain protein. (471 aa)
	LOC109994064	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily. (438 aa)
	LOC110000962	WT1 transcription factor a. (224 aa)
	brca1	Uncharacterized protein. (1180 aa)
	zmpste24	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (467 aa)
	uhrf1	Ubiquitin-like with PHD and ring finger domains 1. (782 aa)
	ENSLBEP00000015835	Protein kinase domain-containing protein. (182 aa)
	LOC109979726	Amine oxidase. (764 aa)
	KDM1B	Lysine demethylase 1B. (584 aa)
	LOC110003860	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily. (425 aa)
	LOC109976307	PR domain containing 14. (587 aa)
	prdm14	PR domain containing 14. (598 aa)
	LOC110002970	Uncharacterized protein. (329 aa)
	ENSLBEP00000019208	MIS18 kinetochore protein A. (231 aa)
	ENSLBEP00000019183	Chromo domain-containing protein. (1438 aa)
	ENSLBEP00000019166	ANK_REP_REGION domain-containing protein. (229 aa)
	mecp2	Methyl CpG binding protein 2. (1036 aa)
	wt1	WT1 transcription factor b. (427 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000019166	ENSLBEP00000019183	ENSLBEP00000019166	ENSLBEP00000019183	ANK_REP_REGION domain-containing protein.	Chromo domain-containing protein.	0.828
ENSLBEP00000019166	brca1	ENSLBEP00000019166	ENSLBEP00000007044	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.493
ENSLBEP00000019183	ENSLBEP00000019166	ENSLBEP00000019183	ENSLBEP00000019166	Chromo domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.828
ENSLBEP00000019183	brca1	ENSLBEP00000019183	ENSLBEP00000007044	Chromo domain-containing protein.	Uncharacterized protein.	0.493
ENSLBEP00000019183	mecp2	ENSLBEP00000019183	ENSLBEP00000016265	Chromo domain-containing protein.	Methyl CpG binding protein 2.	0.472
KDM1B	mecp2	ENSLBEP00000026200	ENSLBEP00000016265	Lysine demethylase 1B.	Methyl CpG binding protein 2.	0.581
LOC109976307	LOC109987121	ENSLBEP00000020239	ENSLBEP00000004773	PR domain containing 14.	POU domain protein.	0.722
LOC109979726	mecp2	ENSLBEP00000038755	ENSLBEP00000016265	Amine oxidase.	Methyl CpG binding protein 2.	0.581
LOC109987121	LOC109976307	ENSLBEP00000004773	ENSLBEP00000020239	POU domain protein.	PR domain containing 14.	0.722
LOC109987121	brca1	ENSLBEP00000004773	ENSLBEP00000007044	POU domain protein.	Uncharacterized protein.	0.409
LOC109987121	prdm14	ENSLBEP00000004773	ENSLBEP00000020094	POU domain protein.	PR domain containing 14.	0.722
LOC110000962	LOC110002970	ENSLBEP00000005221	ENSLBEP00000019587	WT1 transcription factor a.	Uncharacterized protein.	0.899
LOC110002970	LOC110000962	ENSLBEP00000019587	ENSLBEP00000005221	Uncharacterized protein.	WT1 transcription factor a.	0.899
brca1	ENSLBEP00000019166	ENSLBEP00000007044	ENSLBEP00000019166	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.493
brca1	ENSLBEP00000019183	ENSLBEP00000007044	ENSLBEP00000019183	Uncharacterized protein.	Chromo domain-containing protein.	0.493
brca1	LOC109987121	ENSLBEP00000007044	ENSLBEP00000004773	Uncharacterized protein.	POU domain protein.	0.409
brca1	uhrf1	ENSLBEP00000007044	ENSLBEP00000003686	Uncharacterized protein.	Ubiquitin-like with PHD and ring finger domains 1.	0.426
mecp2	ENSLBEP00000019183	ENSLBEP00000016265	ENSLBEP00000019183	Methyl CpG binding protein 2.	Chromo domain-containing protein.	0.472
mecp2	KDM1B	ENSLBEP00000016265	ENSLBEP00000026200	Methyl CpG binding protein 2.	Lysine demethylase 1B.	0.581
mecp2	LOC109979726	ENSLBEP00000016265	ENSLBEP00000038755	Methyl CpG binding protein 2.	Amine oxidase.	0.581