(16 nodes) T cell selection network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	themis2	Thymocyte selection associated family member 2. (593 aa)
	batf	Basic leucine zipper transcription factor, ATF-like. (114 aa)
	il6r	Interleukin 6 receptor. (592 aa)
	SRF	Serum response factor. (278 aa)
	card11	Caspase recruitment domain family, member 11. (1027 aa)
	tbx21	T-box transcription factor 21. (616 aa)
	srf	Serum response factor b. (526 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	ENSLBEP00000016708	Uncharacterized protein. (158 aa)
	cd3e	Ig_4 domain-containing protein. (175 aa)
	mtor	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2492 aa)
	ENSLBEP00000020544	Tyrosine-protein kinase. (514 aa)
	syk	Non-specific protein-tyrosine kinase. (640 aa)
	LOC110001353	Tyrosine-protein kinase. (582 aa)
	ptprc	Protein tyrosine phosphatase receptor type C. (1151 aa)
	stk11	Serine/threonine kinase 11; Belongs to the protein kinase superfamily. (438 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000016708	ENSLBEP00000020544	ENSLBEP00000016708	ENSLBEP00000020544	Uncharacterized protein.	Tyrosine-protein kinase.	0.948
ENSLBEP00000016708	LOC110001353	ENSLBEP00000016708	ENSLBEP00000035798	Uncharacterized protein.	Tyrosine-protein kinase.	0.948
ENSLBEP00000016708	cd3e	ENSLBEP00000016708	ENSLBEP00000016724	Uncharacterized protein.	Ig_4 domain-containing protein.	0.999
ENSLBEP00000016708	ptprc	ENSLBEP00000016708	ENSLBEP00000036424	Uncharacterized protein.	Protein tyrosine phosphatase receptor type C.	0.837
ENSLBEP00000016708	syk	ENSLBEP00000016708	ENSLBEP00000032585	Uncharacterized protein.	Non-specific protein-tyrosine kinase.	0.948
ENSLBEP00000020544	ENSLBEP00000016708	ENSLBEP00000020544	ENSLBEP00000016708	Tyrosine-protein kinase.	Uncharacterized protein.	0.948
ENSLBEP00000020544	card11	ENSLBEP00000020544	ENSLBEP00000013436	Tyrosine-protein kinase.	Caspase recruitment domain family, member 11.	0.643
ENSLBEP00000020544	cd3e	ENSLBEP00000020544	ENSLBEP00000016724	Tyrosine-protein kinase.	Ig_4 domain-containing protein.	0.986
ENSLBEP00000020544	ptprc	ENSLBEP00000020544	ENSLBEP00000036424	Tyrosine-protein kinase.	Protein tyrosine phosphatase receptor type C.	0.499
LOC110001353	ENSLBEP00000016708	ENSLBEP00000035798	ENSLBEP00000016708	Tyrosine-protein kinase.	Uncharacterized protein.	0.948
LOC110001353	card11	ENSLBEP00000035798	ENSLBEP00000013436	Tyrosine-protein kinase.	Caspase recruitment domain family, member 11.	0.643
LOC110001353	cd3e	ENSLBEP00000035798	ENSLBEP00000016724	Tyrosine-protein kinase.	Ig_4 domain-containing protein.	0.986
LOC110001353	ptprc	ENSLBEP00000035798	ENSLBEP00000036424	Tyrosine-protein kinase.	Protein tyrosine phosphatase receptor type C.	0.499
SRF	srf	ENSLBEP00000012673	ENSLBEP00000015093	Serum response factor.	Serum response factor b.	0.844
atg5	mtor	ENSLBEP00000015844	ENSLBEP00000018404	Autophagy protein 5; Involved in autophagic vesicle formation.	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.	0.621
batf	tbx21	ENSLBEP00000001904	ENSLBEP00000013757	Basic leucine zipper transcription factor, ATF-like.	T-box transcription factor 21.	0.444
card11	ENSLBEP00000020544	ENSLBEP00000013436	ENSLBEP00000020544	Caspase recruitment domain family, member 11.	Tyrosine-protein kinase.	0.643
card11	LOC110001353	ENSLBEP00000013436	ENSLBEP00000035798	Caspase recruitment domain family, member 11.	Tyrosine-protein kinase.	0.643
card11	syk	ENSLBEP00000013436	ENSLBEP00000032585	Caspase recruitment domain family, member 11.	Non-specific protein-tyrosine kinase.	0.643
cd3e	ENSLBEP00000016708	ENSLBEP00000016724	ENSLBEP00000016708	Ig_4 domain-containing protein.	Uncharacterized protein.	0.999