(39 nodes) Calcium-dependent protein binding network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109989977	Wolfram syndrome 1a (wolframin). (850 aa)
	anxa6	Annexin. (656 aa)
	LOC109999096	S100 calcium binding protein Z; Belongs to the S-100 family. (159 aa)
	lrrc45	Leucine rich repeat containing 45. (675 aa)
	LOC109988663	Protein S100; Belongs to the S-100 family. (100 aa)
	LOC109995040	EF-hand domain-containing protein. (87 aa)
	LOC109993955	Si:ch211-284f22.3. (300 aa)
	vps37c	VPS37C subunit of ESCRT-I. (349 aa)
	pdcd6	Programmed cell death 6. (185 aa)
	LOC109994993	Stathmin; Belongs to the stathmin family. (179 aa)
	ENSLBEP00000029560	EF-hand domain-containing protein. (100 aa)
	LOC109985113	Si:rp71-17i16.4. (161 aa)
	LOC109985070	Troponin C type 2 (fast). (160 aa)
	LOC110002605	S100 calcium binding protein A1; Belongs to the S-100 family. (145 aa)
	stmn2	Stathmin; Belongs to the stathmin family. (179 aa)
	CHP1	Calcineurin B homologous protein 1. (195 aa)
	LOC109981544	Uncharacterized protein. (161 aa)
	wfs1	Wolfram syndrome 1b (wolframin). (967 aa)
	s100b	S100 calcium binding protein, beta (neural); Belongs to the S-100 family. (94 aa)
	ENSLBEP00000012801	Annexin. (246 aa)
	vps37b	Zgc:114173. (285 aa)
	ENSLBEP00000010710	EF-hand domain-containing protein. (72 aa)
	ENSLBEP00000010441	Annexin. (479 aa)
	TNNC1	Troponin C type 1a (slow). (161 aa)
	LOC109977990	EF-hand domain-containing protein; Belongs to the S-100 family. (99 aa)
	ENSLBEP00000007211	Uncharacterized protein. (86 aa)
	ENSLBEP00000007192	EF-hand domain-containing protein. (91 aa)
	LOC109986698	Uncharacterized protein. (108 aa)
	LOC109995969	Annexin. (377 aa)
	LOC109976804	Calcineurin-like EF-hand protein 1. (195 aa)
	SYT8	Synaptotagmin 8. (415 aa)
	LOC109987090	NMDA receptor synaptonuclear signaling and neuronal migration factor a. (586 aa)
	pdcd6ip	Programmed cell death 6 interacting protein. (891 aa)
	alg2	ALG2 alpha-1,3/1,6-mannosyltransferase. (405 aa)
	LOC109981919	Annexin. (525 aa)
	LOC109990188	Tumor susceptibility 101a. (422 aa)
	LOC109990192	Zgc:123278. (191 aa)
	ENSLBEP00000000636	Uncharacterized protein. (87 aa)
	LOC109995136	NMDA receptor synaptonuclear signaling and neuronal migration factor b. (560 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000010441	LOC109988663	ENSLBEP00000010441	ENSLBEP00000035522	Annexin.	Protein S100; Belongs to the S-100 family.	0.715
ENSLBEP00000010710	LOC109981544	ENSLBEP00000010710	ENSLBEP00000015602	EF-hand domain-containing protein.	Uncharacterized protein.	0.762
ENSLBEP00000010710	TNNC1	ENSLBEP00000010710	ENSLBEP00000009716	EF-hand domain-containing protein.	Troponin C type 1a (slow).	0.762
ENSLBEP00000012801	LOC109988663	ENSLBEP00000012801	ENSLBEP00000035522	Annexin.	Protein S100; Belongs to the S-100 family.	0.715
LOC109977990	LOC109999096	ENSLBEP00000009295	ENSLBEP00000036163	EF-hand domain-containing protein; Belongs to the S-100 family.	S100 calcium binding protein Z; Belongs to the S-100 family.	0.737
LOC109977990	s100b	ENSLBEP00000009295	ENSLBEP00000013357	EF-hand domain-containing protein; Belongs to the S-100 family.	S100 calcium binding protein, beta (neural); Belongs to the S-100 family.	0.912
LOC109981544	ENSLBEP00000010710	ENSLBEP00000015602	ENSLBEP00000010710	Uncharacterized protein.	EF-hand domain-containing protein.	0.762
LOC109981544	LOC109985070	ENSLBEP00000015602	ENSLBEP00000027907	Uncharacterized protein.	Troponin C type 2 (fast).	0.752
LOC109981544	LOC109985113	ENSLBEP00000015602	ENSLBEP00000027944	Uncharacterized protein.	Si:rp71-17i16.4.	0.753
LOC109981919	LOC109988663	ENSLBEP00000002953	ENSLBEP00000035522	Annexin.	Protein S100; Belongs to the S-100 family.	0.715
LOC109985070	LOC109981544	ENSLBEP00000027907	ENSLBEP00000015602	Troponin C type 2 (fast).	Uncharacterized protein.	0.752
LOC109985070	TNNC1	ENSLBEP00000027907	ENSLBEP00000009716	Troponin C type 2 (fast).	Troponin C type 1a (slow).	0.752
LOC109985113	LOC109981544	ENSLBEP00000027944	ENSLBEP00000015602	Si:rp71-17i16.4.	Uncharacterized protein.	0.753
LOC109985113	TNNC1	ENSLBEP00000027944	ENSLBEP00000009716	Si:rp71-17i16.4.	Troponin C type 1a (slow).	0.753
LOC109988663	ENSLBEP00000010441	ENSLBEP00000035522	ENSLBEP00000010441	Protein S100; Belongs to the S-100 family.	Annexin.	0.715
LOC109988663	ENSLBEP00000012801	ENSLBEP00000035522	ENSLBEP00000012801	Protein S100; Belongs to the S-100 family.	Annexin.	0.715
LOC109988663	LOC109981919	ENSLBEP00000035522	ENSLBEP00000002953	Protein S100; Belongs to the S-100 family.	Annexin.	0.715
LOC109988663	LOC109995040	ENSLBEP00000035522	ENSLBEP00000035283	Protein S100; Belongs to the S-100 family.	EF-hand domain-containing protein.	0.437
LOC109988663	LOC109995969	ENSLBEP00000035522	ENSLBEP00000007150	Protein S100; Belongs to the S-100 family.	Annexin.	0.715
LOC109988663	LOC109999096	ENSLBEP00000035522	ENSLBEP00000036163	Protein S100; Belongs to the S-100 family.	S100 calcium binding protein Z; Belongs to the S-100 family.	0.831