(32 nodes) Artery morphogenesis network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC110000815	Vascular endothelial growth factor Aa; Belongs to the PDGF/VEGF growth factor family. (188 aa)
	LOC109992872	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (412 aa)
	hpgd	Malate dehydrogenase 1Aa, NAD (soluble); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (388 aa)
	fkbp10	Peptidylprolyl isomerase. (564 aa)
	calcrl	Calcitonin receptor-like a; Belongs to the G-protein coupled receptor 2 family. (478 aa)
	LOC109989500	Apolipoprotein Ba. (4238 aa)
	bmpr2	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (1041 aa)
	SRF	Serum response factor. (278 aa)
	LOC109997704	Fibrinogen C-terminal domain-containing protein. (476 aa)
	srf	Serum response factor b. (526 aa)
	LOC109999404	PR domain containing 1a, with ZNF domain. (847 aa)
	nprl3	NPR3-like, GATOR1 complex subunit. (608 aa)
	angptl3	Angiopoietin-like 3. (473 aa)
	LOC109990259	Endothelin 1. (196 aa)
	LOC109991455	Angiomotin like 2b. (704 aa)
	LOC110003041	Peptidylprolyl isomerase. (556 aa)
	ednra	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (447 aa)
	ENSLBEP00000025154	Uncharacterized protein. (767 aa)
	nf1	Neurofibromin 1b. (2672 aa)
	LOC109989657	Vitellogenin domain-containing protein. (789 aa)
	ENSLBEP00000026611	Uncharacterized protein. (448 aa)
	LOC109989658	Vitellogenin domain-containing protein. (2351 aa)
	ENSLBEP00000026791	Vitellogenin domain-containing protein. (736 aa)
	LOC109997826	PR domain containing 1b, with ZNF domain. (782 aa)
	LOC109995565	T-cell acute lymphocytic leukemia 1. (356 aa)
	LOC109988649	Uncharacterized protein. (627 aa)
	arid2	AT rich interactive domain 2 (ARID, RFX-like). (1525 aa)
	LOC109985163	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (992 aa)
	LOC110001396	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family. (464 aa)
	amotl2	Angiomotin like 2a. (699 aa)
	LOC109985305	Zgc:56585; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (257 aa)
	gja5	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell. (380 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000026611	ENSLBEP00000026791	ENSLBEP00000026611	ENSLBEP00000026791	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.856
ENSLBEP00000026611	LOC109989657	ENSLBEP00000026611	ENSLBEP00000026580	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.738
ENSLBEP00000026611	LOC109989658	ENSLBEP00000026611	ENSLBEP00000026726	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.500
ENSLBEP00000026791	ENSLBEP00000026611	ENSLBEP00000026791	ENSLBEP00000026611	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.856
LOC109989657	ENSLBEP00000026611	ENSLBEP00000026580	ENSLBEP00000026611	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.738
LOC109989658	ENSLBEP00000026611	ENSLBEP00000026726	ENSLBEP00000026611	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.500
LOC109990259	LOC110001396	ENSLBEP00000022803	ENSLBEP00000034551	Endothelin 1.	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	0.993
LOC109990259	ednra	ENSLBEP00000022803	ENSLBEP00000024101	Endothelin 1.	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	0.993
LOC110001396	LOC109990259	ENSLBEP00000034551	ENSLBEP00000022803	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	Endothelin 1.	0.993
LOC110001396	ednra	ENSLBEP00000034551	ENSLBEP00000024101	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	0.842
SRF	srf	ENSLBEP00000012673	ENSLBEP00000015093	Serum response factor.	Serum response factor b.	0.844
ednra	LOC109990259	ENSLBEP00000024101	ENSLBEP00000022803	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	Endothelin 1.	0.993
ednra	LOC110001396	ENSLBEP00000024101	ENSLBEP00000034551	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	0.842
srf	SRF	ENSLBEP00000015093	ENSLBEP00000012673	Serum response factor b.	Serum response factor.	0.844