(109 nodes) Leukocyte migration network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cxcr5	Chemokine (C-X-C motif) receptor 5; Belongs to the G-protein coupled receptor 1 family. (372 aa)
	scg2	Uncharacterized protein. (608 aa)
	LOC109980066	tRNA-binding domain-containing protein. (311 aa)
	LOC109997739	CD99 molecule. (227 aa)
	LOC110002519	Uncharacterized protein. (240 aa)
	LOC109989114	SCY domain-containing protein. (112 aa)
	LOC109976314	C-C motif chemokine. (103 aa)
	LOC110005909	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (747 aa)
	bsg	Basigin. (273 aa)
	itga9	Integrin, alpha 9; Belongs to the integrin alpha chain family. (622 aa)
	ITGA7	Integrin subunit alpha 7; Belongs to the integrin alpha chain family. (949 aa)
	LOC109981026	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (412 aa)
	LOC109990189	Jagunal homolog 1b. (196 aa)
	aimp1	Aminoacyl tRNA synthetase complex interacting multifunctional protein 1a. (316 aa)
	ENSLBEP00000019140	Artemin a. (96 aa)
	ENSLBEP00000018859	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (358 aa)
	itga3	Integrin, alpha 3b; Belongs to the integrin alpha chain family. (979 aa)
	LOC110006316	Uncharacterized protein. (339 aa)
	ENSLBEP00000018272	Uncharacterized protein. (151 aa)
	trim33	Tripartite motif containing 33. (866 aa)
	LOC109977836	RAB guanine nucleotide exchange factor (GEF) 1. (513 aa)
	LOC109993089	Interleukin-1 receptor-associated kinase 4. (445 aa)
	NKX2-3	NK2 homeobox 3. (308 aa)
	LOC109990682	Solute carrier family 37 member 4. (437 aa)
	LOC109990683	Solute carrier family 37 member 4a. (429 aa)
	umodl1	Uncharacterized protein. (1322 aa)
	ENSLBEP00000016916	Galectin. (136 aa)
	ENSLBEP00000016897	Si:dkey-237i9.8. (587 aa)
	LOC110001713	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (1038 aa)
	LOC109982149	Solute carrier family 37 member 4b. (450 aa)
	gas6	Growth arrest-specific 6. (627 aa)
	CKLF	Chemokine like factor. (150 aa)
	LOC110006231	TGF_BETA_2 domain-containing protein. (224 aa)
	LOC109992014	Platelet-derived growth factor beta polypeptide a; Belongs to the PDGF/VEGF growth factor family. (556 aa)
	LOC109996964	Platelet-derived growth factor beta polypeptide b; Belongs to the PDGF/VEGF growth factor family. (513 aa)
	tbx21	T-box transcription factor 21. (616 aa)
	golph3	Golgi phosphoprotein 3. (260 aa)
	hsp90ab1	Heat shock protein 90, alpha (cytosolic), class B member 1. (725 aa)
	ENSLBEP00000013133	ZP domain-containing protein. (568 aa)
	crkl	V-crk avian sarcoma virus CT10 oncogene homolog-like. (318 aa)
	LOC109984927	TAFA chemokine like family member 3. (169 aa)
	LOC110003788	SEFIR domain-containing protein. (617 aa)
	LOC110006103	CD99 molecule-like 2. (215 aa)
	LOC109983694	G_PROTEIN_RECEP_F1_2 domain-containing protein. (335 aa)
	rabgef1	Uncharacterized protein. (499 aa)
	ENSLBEP00000009539	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (350 aa)
	cd34	Si:ch211-286o17.1. (354 aa)
	LOC109987769	Chemokine (C-C motif) ligand 25b. (100 aa)
	ccl17	SCY domain-containing protein. (98 aa)
	podxl2	Uncharacterized protein. (690 aa)
	LOC109996898	Jagunal homolog 1a. (183 aa)
	ENSLBEP00000007935	Ninjurin 1. (130 aa)
	LOC109980908	Uncharacterized protein. (597 aa)
	LOC109995876	Endothelin receptor Ba; Belongs to the G-protein coupled receptor 1 family. (418 aa)
	LOC109975585	Protein kinase domain-containing protein. (466 aa)
	ENSLBEP00000006216	Uncharacterized protein. (479 aa)
	LOC110005600	Uncharacterized protein. (161 aa)
	LOC109999265	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (358 aa)
	LOC110005592	Uncharacterized protein. (183 aa)
	ENSLBEP00000004509	Chemokine (C-C motif) receptor 6b. (305 aa)
	LOC109998574	Integrin, alpha 9. (393 aa)
	LOC109975478	Cytochrome P450, family 7, subfamily B, polypeptide 1. (537 aa)
	ENSLBEP00000002730	C-C motif chemokine. (115 aa)
	ano6	Anoctamin. (920 aa)
	ENSLBEP00000037888	Uncharacterized protein. (167 aa)
	ENSLBEP00000037876	Uncharacterized protein. (153 aa)
	gbf1	Golgi brefeldin A resistant guanine nucleotide exchange factor 1. (1805 aa)
	CCR6	C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family. (408 aa)
	ENSLBEP00000035034	Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (865 aa)
	LOC109983424	TAFA chemokine like family member 4b. (135 aa)
	ENSLBEP00000034416	Chemokine (C-X-C motif) receptor 2; Belongs to the G-protein coupled receptor 1 family. (347 aa)
	ENSLBEP00000033705	Galectin. (281 aa)
	LOC109993297	F11 receptor, tandem duplicate 1. (319 aa)
	LOC109998954	Uncharacterized protein. (322 aa)
	il17ra	SEFIR domain-containing protein. (807 aa)
	nkx2-3	NK2 homeobox 3. (343 aa)
	LOC109982928	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2. (736 aa)
	LOC109982952	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1. (722 aa)
	LOC110004024	Ankyrin repeat and SOCS box containing 2a, tandem duplicate 1. (624 aa)
	LOC110004023	Uncharacterized protein. (639 aa)
	LOC110005394	Aminoacyl tRNA synthetase complex interacting multifunctional protein 1b. (325 aa)
	crk	CRK proto-oncogene, adaptor protein. (315 aa)
	LOC109993836	Platelet/endothelial cell adhesion molecule 1. (797 aa)
	LOC109984085	Secretogranin II (chromogranin C), b. (578 aa)
	LOC109987072	Endothelin 2. (219 aa)
	LOC109983967	G protein-coupled receptor 183a; Belongs to the G-protein coupled receptor 1 family. (384 aa)
	LOC109983961	Si:ch211-184m13.4; Belongs to the G-protein coupled receptor 1 family. (342 aa)
	pikfyve	Phosphoinositide kinase, FYVE finger containing. (1917 aa)
	ENSLBEP00000029131	RAB guanine nucleotide exchange factor (GEF) 1, like. (563 aa)
	LOC110001247	Chemokine (C-X-C motif) receptor 3, tandem duplicate 2; Belongs to the G-protein coupled receptor 1 family. (365 aa)
	LOC109986980	TNF superfamily member 11; Belongs to the tumor necrosis factor family. (268 aa)
	LOC110004759	Signal recognition particle 54 kDa protein. (504 aa)
	asb2	Ankyrin repeat and SOCS box containing 2b. (472 aa)
	crtam	Ig-like domain-containing protein. (455 aa)
	itga4	Integrin alpha 4; Belongs to the integrin alpha chain family. (1032 aa)
	LOC109984338	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family. (448 aa)
	nf1	Neurofibromin 1b. (2672 aa)
	ppib	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (216 aa)
	LOC110003091	Galectin. (296 aa)
	LOC109997145	Si:dkey-27b3.2. (293 aa)
	LOC109987355	ZP domain-containing protein. (630 aa)
	SELE	Uncharacterized protein. (388 aa)
	ENSLBEP00000024475	Uncharacterized protein. (276 aa)
	ENSLBEP00000024452	Selectin P. (719 aa)
	LOC109998827	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
	itga6	Integrin, alpha 6a; Belongs to the integrin alpha chain family. (1088 aa)
	ENSLBEP00000023709	Uncharacterized protein. (171 aa)
	ENSLBEP00000023677	Uncharacterized protein. (469 aa)
	il16	Interleukin 16. (1558 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCR6	ENSLBEP00000002730	ENSLBEP00000035647	ENSLBEP00000002730	C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine.	0.900
CCR6	ENSLBEP00000004509	ENSLBEP00000035647	ENSLBEP00000004509	C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-C motif) receptor 6b.	0.831
CCR6	LOC109976314	ENSLBEP00000035647	ENSLBEP00000021617	C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family.	C-C motif chemokine.	0.834
CCR6	LOC109987769	ENSLBEP00000035647	ENSLBEP00000008897	C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-C motif) ligand 25b.	0.834
CCR6	LOC109989114	ENSLBEP00000035647	ENSLBEP00000021973	C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family.	SCY domain-containing protein.	0.891
CCR6	ccl17	ENSLBEP00000035647	ENSLBEP00000008696	C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family.	SCY domain-containing protein.	0.841
CCR6	cxcr5	ENSLBEP00000035647	ENSLBEP00000023330	C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-X-C motif) receptor 5; Belongs to the G-protein coupled receptor 1 family.	0.479
ENSLBEP00000002730	CCR6	ENSLBEP00000002730	ENSLBEP00000035647	C-C motif chemokine.	C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family.	0.900
ENSLBEP00000002730	ENSLBEP00000004509	ENSLBEP00000002730	ENSLBEP00000004509	C-C motif chemokine.	Chemokine (C-C motif) receptor 6b.	0.993
ENSLBEP00000002730	ENSLBEP00000009539	ENSLBEP00000002730	ENSLBEP00000009539	C-C motif chemokine.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.832
ENSLBEP00000002730	ENSLBEP00000018859	ENSLBEP00000002730	ENSLBEP00000018859	C-C motif chemokine.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.900
ENSLBEP00000002730	ENSLBEP00000034416	ENSLBEP00000002730	ENSLBEP00000034416	C-C motif chemokine.	Chemokine (C-X-C motif) receptor 2; Belongs to the G-protein coupled receptor 1 family.	0.832
ENSLBEP00000002730	LOC109976314	ENSLBEP00000002730	ENSLBEP00000021617	C-C motif chemokine.	C-C motif chemokine.	0.504
ENSLBEP00000002730	LOC109987769	ENSLBEP00000002730	ENSLBEP00000008897	C-C motif chemokine.	Chemokine (C-C motif) ligand 25b.	0.504
ENSLBEP00000002730	LOC109989114	ENSLBEP00000002730	ENSLBEP00000021973	C-C motif chemokine.	SCY domain-containing protein.	0.424
ENSLBEP00000002730	LOC109999265	ENSLBEP00000002730	ENSLBEP00000005201	C-C motif chemokine.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.832
ENSLBEP00000002730	cxcr5	ENSLBEP00000002730	ENSLBEP00000023330	C-C motif chemokine.	Chemokine (C-X-C motif) receptor 5; Belongs to the G-protein coupled receptor 1 family.	0.896
ENSLBEP00000004509	CCR6	ENSLBEP00000004509	ENSLBEP00000035647	Chemokine (C-C motif) receptor 6b.	C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family.	0.831
ENSLBEP00000004509	ENSLBEP00000002730	ENSLBEP00000004509	ENSLBEP00000002730	Chemokine (C-C motif) receptor 6b.	C-C motif chemokine.	0.993
ENSLBEP00000004509	ENSLBEP00000009539	ENSLBEP00000004509	ENSLBEP00000009539	Chemokine (C-C motif) receptor 6b.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.533