46 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109977987	Uncharacterized protein. (251 aa)
	zw10	Zw10 kinetochore protein. (767 aa)
	mis12	MIS12 kinetochore complex component. (221 aa)
	KIF18A	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (903 aa)
	pinx1	PIN2 (TERF1) interacting telomerase inhibitor 1. (396 aa)
	nudc	NudC nuclear distribution protein. (335 aa)
	terb2	Telomere repeat binding bouquet formation protein 2. (198 aa)
	spdl1	Protein Spindly; Required for the localization of dynein and dynactin to the mitotic kintochore. Dynein is believed to control the initial lateral interaction between the kinetochore and spindle microtubules and to facilitate the subsequent formation of end-on kinetochore-microtubule attachments mediated by the NDC80 complex; Belongs to the Spindly family. (579 aa)
	spo11	SPO11 initiator of meiotic double stranded breaks. (390 aa)
	LOC109983185	Uncharacterized protein. (454 aa)
	mad1l1	Mitotic arrest deficient 1 like 1. (722 aa)
	LOC109976167	UF2 component of NDC80 kinetochore complex. (270 aa)
	LOC109977707	Uncharacterized protein. (767 aa)
	cdca5	Cell division cycle associated 5. (236 aa)
	LOC109982539	Uncharacterized protein; Belongs to the AAA ATPase family. (437 aa)
	CDT1	Chromatin licensing and DNA replication factor 1. (683 aa)
	LOC109998151	Telomere repeat binding bouquet formation protein 1. (839 aa)
	atm	Non-specific serine/threonine protein kinase. (3019 aa)
	cenpq	Uncharacterized protein. (267 aa)
	rmdn1	Regulator of microtubule dynamics 1. (308 aa)
	LOC109989856	CULLIN_2 domain-containing protein; Belongs to the cullin family. (767 aa)
	NDE1	nudE neurodevelopment protein 1. (345 aa)
	LOC109989313	Karyopherin (importin) beta 1. (892 aa)
	ENSLBEP00000034172	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1787 aa)
	LOC110000317	Microtubule-associated protein, RP/EB family, member 1b. (257 aa)
	trappc12	Trafficking protein particle complex 12. (790 aa)
	seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (415 aa)
	CUL3	Cullin 3; Belongs to the cullin family. (766 aa)
	kif14	Kinesin family member 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1184 aa)
	pibf1	Progesterone immunomodulatory binding factor 1. (765 aa)
	nde1	NudE neurodevelopment protein 1. (345 aa)
	LOC110000196	NudE neurodevelopment protein 1-like 1b. (340 aa)
	ndc80	NDC80 kinetochore complex component. (641 aa)
	incenp	Uncharacterized protein. (840 aa)
	ENSLBEP00000024862	Si:dkey-185p13.1. (77 aa)
	VPS4B	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (438 aa)
	ccnb1	Cyclin B1; Belongs to the cyclin family. (399 aa)
	fam83d	Family with sequence similarity 83 member D. (553 aa)
	LOC109975138	Chromatin licensing and DNA replication factor 1. (359 aa)
	terf1	Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat. (370 aa)
	vps4a	Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)
	LOC109994098	NUDE_C domain-containing protein. (364 aa)
	cdc23	CDC23 (cell division cycle 23, yeast, homolog). (575 aa)
	meioc	Uncharacterized protein. (722 aa)
	ENSLBEP00000004451	CENP-F_N domain-containing protein. (110 aa)
	mlh1	MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli). (648 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDT1	CUL3	ENSLBEP00000019127	ENSLBEP00000030503	Chromatin licensing and DNA replication factor 1.	Cullin 3; Belongs to the cullin family.	0.456
CDT1	ENSLBEP00000034172	ENSLBEP00000019127	ENSLBEP00000034172	Chromatin licensing and DNA replication factor 1.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.423
CDT1	KIF18A	ENSLBEP00000019127	ENSLBEP00000003272	Chromatin licensing and DNA replication factor 1.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.460
CDT1	LOC109976167	ENSLBEP00000019127	ENSLBEP00000012275	Chromatin licensing and DNA replication factor 1.	UF2 component of NDC80 kinetochore complex.	0.576
CDT1	LOC109983185	ENSLBEP00000019127	ENSLBEP00000011303	Chromatin licensing and DNA replication factor 1.	Uncharacterized protein.	0.576
CDT1	LOC109989856	ENSLBEP00000019127	ENSLBEP00000037002	Chromatin licensing and DNA replication factor 1.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.456
CDT1	ccnb1	ENSLBEP00000019127	ENSLBEP00000024076	Chromatin licensing and DNA replication factor 1.	Cyclin B1; Belongs to the cyclin family.	0.569
CDT1	cdc23	ENSLBEP00000019127	ENSLBEP00000004467	Chromatin licensing and DNA replication factor 1.	CDC23 (cell division cycle 23, yeast, homolog).	0.759
CDT1	cdca5	ENSLBEP00000019127	ENSLBEP00000013927	Chromatin licensing and DNA replication factor 1.	Cell division cycle associated 5.	0.813
CDT1	incenp	ENSLBEP00000019127	ENSLBEP00000024971	Chromatin licensing and DNA replication factor 1.	Uncharacterized protein.	0.741
CDT1	ndc80	ENSLBEP00000019127	ENSLBEP00000026411	Chromatin licensing and DNA replication factor 1.	NDC80 kinetochore complex component.	0.682
CUL3	CDT1	ENSLBEP00000030503	ENSLBEP00000019127	Cullin 3; Belongs to the cullin family.	Chromatin licensing and DNA replication factor 1.	0.456
CUL3	LOC109975138	ENSLBEP00000030503	ENSLBEP00000020540	Cullin 3; Belongs to the cullin family.	Chromatin licensing and DNA replication factor 1.	0.456
CUL3	ccnb1	ENSLBEP00000030503	ENSLBEP00000024076	Cullin 3; Belongs to the cullin family.	Cyclin B1; Belongs to the cyclin family.	0.615
ENSLBEP00000004451	ENSLBEP00000034172	ENSLBEP00000004451	ENSLBEP00000034172	CENP-F_N domain-containing protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.972
ENSLBEP00000004451	KIF18A	ENSLBEP00000004451	ENSLBEP00000003272	CENP-F_N domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.870
ENSLBEP00000004451	LOC109976167	ENSLBEP00000004451	ENSLBEP00000012275	CENP-F_N domain-containing protein.	UF2 component of NDC80 kinetochore complex.	0.886
ENSLBEP00000004451	LOC109983185	ENSLBEP00000004451	ENSLBEP00000011303	CENP-F_N domain-containing protein.	Uncharacterized protein.	0.886
ENSLBEP00000004451	LOC109994098	ENSLBEP00000004451	ENSLBEP00000005840	CENP-F_N domain-containing protein.	NUDE_C domain-containing protein.	0.467
ENSLBEP00000004451	LOC110000196	ENSLBEP00000004451	ENSLBEP00000027241	CENP-F_N domain-containing protein.	NudE neurodevelopment protein 1-like 1b.	0.466