21 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	srf	Serum response factor b. (526 aa)
	LOC109988188	Uncharacterized protein. (278 aa)
	LOC109986563	Formin binding protein 1-like. (551 aa)
	LOC109981964	Neuropilin; Belongs to the neuropilin family. (874 aa)
	ENSLBEP00000008203	PL48 domain-containing protein. (797 aa)
	ENSLBEP00000010352	Uncharacterized protein. (98 aa)
	palm	Paralemmin 1b. (229 aa)
	SRF	Serum response factor. (278 aa)
	myo3a	Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1650 aa)
	LOC109994148	Cell division cycle 42. (191 aa)
	CDC42	Cell division cycle 42. (203 aa)
	LOC109995395	Uncharacterized protein. (191 aa)
	fmr1	Fragile X mental retardation 1. (583 aa)
	LOC109985580	Agrin. (1838 aa)
	LOC109981082	Teneurin transmembrane protein 1. (2704 aa)
	gpm6a	Glycoprotein M6Aa. (278 aa)
	LOC109987281	Dihydropyrimidinase like 3. (666 aa)
	myo3b	Myosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1244 aa)
	ripor2	RHO family interacting cell polarization regulator 2. (1040 aa)
	LOC110003296	Uncharacterized protein. (138 aa)
	bcas3	BCAS3 microtubule associated cell migration factor. (859 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	LOC109981964	ENSLBEP00000014221	ENSLBEP00000007426	Cell division cycle 42.	Neuropilin; Belongs to the neuropilin family.	0.406
CDC42	LOC109986563	ENSLBEP00000014221	ENSLBEP00000005798	Cell division cycle 42.	Formin binding protein 1-like.	0.821
CDC42	LOC109995395	ENSLBEP00000014221	ENSLBEP00000015957	Cell division cycle 42.	Uncharacterized protein.	0.815
CDC42	LOC110003296	ENSLBEP00000014221	ENSLBEP00000030398	Cell division cycle 42.	Uncharacterized protein.	0.816
CDC42	myo3a	ENSLBEP00000014221	ENSLBEP00000012957	Cell division cycle 42.	Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.649
CDC42	myo3b	ENSLBEP00000014221	ENSLBEP00000023153	Cell division cycle 42.	Myosin IIIB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.649
LOC109981082	LOC109985580	ENSLBEP00000019508	ENSLBEP00000018720	Teneurin transmembrane protein 1.	Agrin.	0.469
LOC109981964	CDC42	ENSLBEP00000007426	ENSLBEP00000014221	Neuropilin; Belongs to the neuropilin family.	Cell division cycle 42.	0.406
LOC109981964	LOC109987281	ENSLBEP00000007426	ENSLBEP00000022029	Neuropilin; Belongs to the neuropilin family.	Dihydropyrimidinase like 3.	0.528
LOC109981964	LOC109994148	ENSLBEP00000007426	ENSLBEP00000013739	Neuropilin; Belongs to the neuropilin family.	Cell division cycle 42.	0.406
LOC109981964	LOC109995395	ENSLBEP00000007426	ENSLBEP00000015957	Neuropilin; Belongs to the neuropilin family.	Uncharacterized protein.	0.401
LOC109981964	LOC110003296	ENSLBEP00000007426	ENSLBEP00000030398	Neuropilin; Belongs to the neuropilin family.	Uncharacterized protein.	0.401
LOC109985580	LOC109981082	ENSLBEP00000018720	ENSLBEP00000019508	Agrin.	Teneurin transmembrane protein 1.	0.469
LOC109986563	CDC42	ENSLBEP00000005798	ENSLBEP00000014221	Formin binding protein 1-like.	Cell division cycle 42.	0.821
LOC109986563	LOC109994148	ENSLBEP00000005798	ENSLBEP00000013739	Formin binding protein 1-like.	Cell division cycle 42.	0.821
LOC109986563	LOC109995395	ENSLBEP00000005798	ENSLBEP00000015957	Formin binding protein 1-like.	Uncharacterized protein.	0.709
LOC109986563	LOC110003296	ENSLBEP00000005798	ENSLBEP00000030398	Formin binding protein 1-like.	Uncharacterized protein.	0.709
LOC109987281	LOC109981964	ENSLBEP00000022029	ENSLBEP00000007426	Dihydropyrimidinase like 3.	Neuropilin; Belongs to the neuropilin family.	0.528
LOC109994148	LOC109981964	ENSLBEP00000013739	ENSLBEP00000007426	Cell division cycle 42.	Neuropilin; Belongs to the neuropilin family.	0.406
LOC109994148	LOC109986563	ENSLBEP00000013739	ENSLBEP00000005798	Cell division cycle 42.	Formin binding protein 1-like.	0.821