(28 nodes) Long-term synaptic potentiation network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109999239	Teashirt zinc finger homeobox 3b. (1227 aa)
	grin2a	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a. (1433 aa)
	LOC109994116	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca. (1391 aa)
	nfatc4	Nuclear factor of activated T cells 4. (853 aa)
	ENSLBEP00000008026	Si:ch73-343g19.4. (89 aa)
	ENSLBEP00000008730	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (273 aa)
	ENSLBEP00000008762	Na_Ca_ex domain-containing protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (269 aa)
	LOC109988253	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1342 aa)
	LOC109988319	Teashirt zinc finger homeobox 3a. (1118 aa)
	LOC109998064	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (620 aa)
	nptn	Neuroplastin b. (394 aa)
	mecp2	Methyl CpG binding protein 2. (1036 aa)
	RELN	Reelin. (3414 aa)
	LOC110003082	Uncharacterized protein. (380 aa)
	LOC110004274	Si:ch73-330k17.3. (221 aa)
	LOC109982239	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (667 aa)
	LOC109982278	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (586 aa)
	LOC109993686	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b. (1831 aa)
	ENSLBEP00000023069	Uncharacterized protein. (86 aa)
	serpine2	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family. (397 aa)
	ENSLBEP00000026089	ANF_receptor domain-containing protein. (320 aa)
	SLC24A2	Solute carrier family 24 member 2; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (629 aa)
	prrt1	Proline-rich transmembrane protein 1. (239 aa)
	syt12	Synaptotagmin XII. (429 aa)
	lrrtm1	Leucine rich repeat transmembrane neuronal 1. (525 aa)
	SLC24A1	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (743 aa)
	lrrtm2	Leucine rich repeat transmembrane neuronal 2. (638 aa)
	LOC109981873	Uncharacterized protein. (1391 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000008026	lrrtm2	ENSLBEP00000008026	ENSLBEP00000036850	Si:ch73-343g19.4.	Leucine rich repeat transmembrane neuronal 2.	0.406
ENSLBEP00000026089	mecp2	ENSLBEP00000026089	ENSLBEP00000016265	ANF_receptor domain-containing protein.	Methyl CpG binding protein 2.	0.560
LOC109981873	LOC109988253	ENSLBEP00000036956	ENSLBEP00000008940	Uncharacterized protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.811
LOC109981873	LOC109994116	ENSLBEP00000036956	ENSLBEP00000005338	Uncharacterized protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.	0.885
LOC109981873	grin2a	ENSLBEP00000036956	ENSLBEP00000003667	Uncharacterized protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	0.883
LOC109981873	mecp2	ENSLBEP00000036956	ENSLBEP00000016265	Uncharacterized protein.	Methyl CpG binding protein 2.	0.488
LOC109982239	SLC24A1	ENSLBEP00000020833	ENSLBEP00000032683	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.833
LOC109982278	SLC24A1	ENSLBEP00000020851	ENSLBEP00000032683	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.837
LOC109988253	LOC109981873	ENSLBEP00000008940	ENSLBEP00000036956	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.811
LOC109988253	LOC109994116	ENSLBEP00000008940	ENSLBEP00000005338	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.	0.816
LOC109988253	mecp2	ENSLBEP00000008940	ENSLBEP00000016265	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Methyl CpG binding protein 2.	0.488
LOC109993686	mecp2	ENSLBEP00000021573	ENSLBEP00000016265	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b.	Methyl CpG binding protein 2.	0.488
LOC109994116	LOC109981873	ENSLBEP00000005338	ENSLBEP00000036956	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.	Uncharacterized protein.	0.885
LOC109994116	LOC109988253	ENSLBEP00000005338	ENSLBEP00000008940	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, b; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.816
LOC109994116	grin2a	ENSLBEP00000005338	ENSLBEP00000003667	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	0.883
LOC109994116	mecp2	ENSLBEP00000005338	ENSLBEP00000016265	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.	Methyl CpG binding protein 2.	0.488
SLC24A1	LOC109982239	ENSLBEP00000032683	ENSLBEP00000020833	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.833
SLC24A1	LOC109982278	ENSLBEP00000032683	ENSLBEP00000020851	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.	0.837
grin2a	LOC109981873	ENSLBEP00000003667	ENSLBEP00000036956	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	Uncharacterized protein.	0.883
grin2a	LOC109994116	ENSLBEP00000003667	ENSLBEP00000005338	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca.	0.883