(13 nodes) Secondary palate development network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TGFBR2	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (555 aa)
	LOC109991202	Mothers against decapentaplegic homolog. (521 aa)
	tbx1	T-box transcription factor 1. (519 aa)
	LOC109996453	Uncharacterized protein. (655 aa)
	LOC109991924	Uncharacterized protein. (325 aa)
	wnt11	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (358 aa)
	lef1	Lymphoid enhancer-binding factor 1. (379 aa)
	LOC109981172	Mothers against decapentaplegic homolog. (503 aa)
	LOC110000840	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (485 aa)
	LOC109998931	Mothers against decapentaplegic homolog. (563 aa)
	itgb8	Integrin beta; Belongs to the integrin beta chain family. (801 aa)
	LOC109993958	Leucine rich repeat containing 32. (714 aa)
	itgb6	Integrin beta; Belongs to the integrin beta chain family. (782 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109981172	LOC109991202	ENSLBEP00000023864	ENSLBEP00000009797	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.840
LOC109981172	LOC109998931	ENSLBEP00000023864	ENSLBEP00000032363	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.841
LOC109981172	LOC110000840	ENSLBEP00000023864	ENSLBEP00000032116	Mothers against decapentaplegic homolog.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.843
LOC109981172	TGFBR2	ENSLBEP00000023864	ENSLBEP00000036684	Mothers against decapentaplegic homolog.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.843
LOC109981172	lef1	ENSLBEP00000023864	ENSLBEP00000019554	Mothers against decapentaplegic homolog.	Lymphoid enhancer-binding factor 1.	0.928
LOC109991202	LOC109981172	ENSLBEP00000009797	ENSLBEP00000023864	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.840
LOC109991202	LOC109998931	ENSLBEP00000009797	ENSLBEP00000032363	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.841
LOC109991202	LOC110000840	ENSLBEP00000009797	ENSLBEP00000032116	Mothers against decapentaplegic homolog.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.843
LOC109991202	TGFBR2	ENSLBEP00000009797	ENSLBEP00000036684	Mothers against decapentaplegic homolog.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.843
LOC109991202	lef1	ENSLBEP00000009797	ENSLBEP00000019554	Mothers against decapentaplegic homolog.	Lymphoid enhancer-binding factor 1.	0.928
LOC109998931	LOC109981172	ENSLBEP00000032363	ENSLBEP00000023864	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.841
LOC109998931	LOC109991202	ENSLBEP00000032363	ENSLBEP00000009797	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.841
LOC109998931	LOC110000840	ENSLBEP00000032363	ENSLBEP00000032116	Mothers against decapentaplegic homolog.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.843
LOC109998931	TGFBR2	ENSLBEP00000032363	ENSLBEP00000036684	Mothers against decapentaplegic homolog.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.843
LOC109998931	lef1	ENSLBEP00000032363	ENSLBEP00000019554	Mothers against decapentaplegic homolog.	Lymphoid enhancer-binding factor 1.	0.928
LOC110000840	LOC109981172	ENSLBEP00000032116	ENSLBEP00000023864	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Mothers against decapentaplegic homolog.	0.843
LOC110000840	LOC109991202	ENSLBEP00000032116	ENSLBEP00000009797	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Mothers against decapentaplegic homolog.	0.843
LOC110000840	LOC109998931	ENSLBEP00000032116	ENSLBEP00000032363	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Mothers against decapentaplegic homolog.	0.843
LOC110000840	TGFBR2	ENSLBEP00000032116	ENSLBEP00000036684	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.842
TGFBR2	LOC109981172	ENSLBEP00000036684	ENSLBEP00000023864	Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	Mothers against decapentaplegic homolog.	0.843