STRINGSTRING
prpf8 prpf8 otud7b otud7b LOC109982198 LOC109982198 LOC109994280 LOC109994280 zbtb1 zbtb1 optn optn LOC109987904 LOC109987904 zranb1 zranb1 atrip atrip ENSLBEP00000033073 ENSLBEP00000033073 ENSLBEP00000032673 ENSLBEP00000032673 sqstm1 sqstm1 tnfaip3 tnfaip3 ENSLBEP00000000824 ENSLBEP00000000824 LOC109991758 LOC109991758 tab3 tab3 ENSLBEP00000013070 ENSLBEP00000013070 zranb3 zranb3 tab2 tab2 LOC109996552 LOC109996552
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
prpf8Pre-mRNA processing factor 8. (2338 aa)
otud7bOTU deubiquitinase 7B. (925 aa)
LOC109982198OTU deubiquitinase 7A. (958 aa)
LOC109994280Uncharacterized protein. (1128 aa)
zbtb1Zinc finger and BTB domain containing 1. (651 aa)
optnOptineurin. (527 aa)
LOC109987904Zinc finger, RAN-binding domain containing 1b. (761 aa)
zranb1Zinc finger, RAN-binding domain containing 1a. (707 aa)
atripUncharacterized protein. (832 aa)
ENSLBEP00000033073SprT-like N-terminal domain. (238 aa)
ENSLBEP00000032673PB1 domain-containing protein. (108 aa)
sqstm1Sequestosome 1. (272 aa)
tnfaip3Tumor necrosis factor, alpha-induced protein 3. (867 aa)
ENSLBEP00000000824Si:dkey-181m9.8. (475 aa)
LOC109991758Poly [ADP-ribose] polymerase. (751 aa)
tab3TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (609 aa)
ENSLBEP00000013070Poly [ADP-ribose] polymerase. (365 aa)
zranb3Zinc finger, RAN-binding domain containing 3. (1192 aa)
tab2TGF-beta activated kinase 1 (MAP3K7) binding protein 2. (774 aa)
LOC109996552Uncharacterized protein. (1089 aa)
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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