16 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109985095	Laminin, beta 2-like. (1791 aa)
	LOC109978841	Laminin N-terminal domain-containing protein. (314 aa)
	LOC109994603	Peroxidasin. (1419 aa)
	ntn4	Netrin 4. (626 aa)
	ENSLBEP00000011639	Si:ch73-334d15.2. (165 aa)
	LOC110004195	Uncharacterized protein. (638 aa)
	LAMB1	Laminin, beta 1a. (1791 aa)
	LOC110001690	Uncharacterized protein. (1436 aa)
	LOC109975356	Vav 3 guanine nucleotide exchange factor b. (456 aa)
	LOC109989134	Netrin g2a. (579 aa)
	LOC109983928	Uncharacterized protein. (658 aa)
	lamb3	Uncharacterized protein. (1157 aa)
	lamb2	Laminin, beta 2 (laminin S). (1785 aa)
	ENSLBEP00000029121	Uncharacterized protein. (540 aa)
	LOC109984480	Netrin G2. (633 aa)
	ntng1	Netrin g1a. (546 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000029121	LAMB1	ENSLBEP00000029121	ENSLBEP00000015618	Uncharacterized protein.	Laminin, beta 1a.	0.828
ENSLBEP00000029121	LOC109975356	ENSLBEP00000029121	ENSLBEP00000020235	Uncharacterized protein.	Vav 3 guanine nucleotide exchange factor b.	0.427
ENSLBEP00000029121	lamb2	ENSLBEP00000029121	ENSLBEP00000026645	Uncharacterized protein.	Laminin, beta 2 (laminin S).	0.723
ENSLBEP00000029121	lamb3	ENSLBEP00000029121	ENSLBEP00000026141	Uncharacterized protein.	Uncharacterized protein.	0.838
ENSLBEP00000029121	ntng1	ENSLBEP00000029121	ENSLBEP00000033193	Uncharacterized protein.	Netrin g1a.	0.427
LAMB1	ENSLBEP00000029121	ENSLBEP00000015618	ENSLBEP00000029121	Laminin, beta 1a.	Uncharacterized protein.	0.828
LAMB1	LOC109975356	ENSLBEP00000015618	ENSLBEP00000020235	Laminin, beta 1a.	Vav 3 guanine nucleotide exchange factor b.	0.427
LAMB1	LOC109985095	ENSLBEP00000015618	ENSLBEP00000026840	Laminin, beta 1a.	Laminin, beta 2-like.	0.648
LAMB1	lamb3	ENSLBEP00000015618	ENSLBEP00000026141	Laminin, beta 1a.	Uncharacterized protein.	0.850
LAMB1	ntng1	ENSLBEP00000015618	ENSLBEP00000033193	Laminin, beta 1a.	Netrin g1a.	0.427
LOC109975356	ENSLBEP00000029121	ENSLBEP00000020235	ENSLBEP00000029121	Vav 3 guanine nucleotide exchange factor b.	Uncharacterized protein.	0.427
LOC109975356	LAMB1	ENSLBEP00000020235	ENSLBEP00000015618	Vav 3 guanine nucleotide exchange factor b.	Laminin, beta 1a.	0.427
LOC109975356	LOC109978841	ENSLBEP00000020235	ENSLBEP00000003744	Vav 3 guanine nucleotide exchange factor b.	Laminin N-terminal domain-containing protein.	0.469
LOC109975356	LOC109983928	ENSLBEP00000020235	ENSLBEP00000020613	Vav 3 guanine nucleotide exchange factor b.	Uncharacterized protein.	0.427
LOC109975356	LOC109984480	ENSLBEP00000020235	ENSLBEP00000031610	Vav 3 guanine nucleotide exchange factor b.	Netrin G2.	0.470
LOC109975356	LOC109985095	ENSLBEP00000020235	ENSLBEP00000026840	Vav 3 guanine nucleotide exchange factor b.	Laminin, beta 2-like.	0.427
LOC109975356	LOC109989134	ENSLBEP00000020235	ENSLBEP00000020243	Vav 3 guanine nucleotide exchange factor b.	Netrin g2a.	0.477
LOC109975356	LOC110004195	ENSLBEP00000020235	ENSLBEP00000014479	Vav 3 guanine nucleotide exchange factor b.	Uncharacterized protein.	0.427
LOC109975356	lamb2	ENSLBEP00000020235	ENSLBEP00000026645	Vav 3 guanine nucleotide exchange factor b.	Laminin, beta 2 (laminin S).	0.427
LOC109975356	lamb3	ENSLBEP00000020235	ENSLBEP00000026141	Vav 3 guanine nucleotide exchange factor b.	Uncharacterized protein.	0.427