(7 nodes) Protein linear polyubiquitination network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109994280	Uncharacterized protein. (1128 aa)
	ENSLBEP00000000824	Si:dkey-181m9.8. (475 aa)
	ENSLBEP00000016635	RanBP2-type domain-containing protein. (299 aa)
	LOC109996552	Uncharacterized protein. (1089 aa)
	LOC109985933	SHANK-associated RH domain interacting protein. (436 aa)
	LOC109998255	Sharpin and rbck1 related. (710 aa)
	LOC109997240	RanBP-type and C3HC4-type zinc finger containing 1. (516 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000000824	ENSLBEP00000016635	ENSLBEP00000000824	ENSLBEP00000016635	Si:dkey-181m9.8.	RanBP2-type domain-containing protein.	0.983
ENSLBEP00000000824	LOC109985933	ENSLBEP00000000824	ENSLBEP00000021638	Si:dkey-181m9.8.	SHANK-associated RH domain interacting protein.	0.983
ENSLBEP00000000824	LOC109994280	ENSLBEP00000000824	ENSLBEP00000022996	Si:dkey-181m9.8.	Uncharacterized protein.	0.894
ENSLBEP00000000824	LOC109996552	ENSLBEP00000000824	ENSLBEP00000018837	Si:dkey-181m9.8.	Uncharacterized protein.	0.893
ENSLBEP00000000824	LOC109997240	ENSLBEP00000000824	ENSLBEP00000031048	Si:dkey-181m9.8.	RanBP-type and C3HC4-type zinc finger containing 1.	0.985
ENSLBEP00000000824	LOC109998255	ENSLBEP00000000824	ENSLBEP00000021966	Si:dkey-181m9.8.	Sharpin and rbck1 related.	0.985
ENSLBEP00000016635	ENSLBEP00000000824	ENSLBEP00000016635	ENSLBEP00000000824	RanBP2-type domain-containing protein.	Si:dkey-181m9.8.	0.983
ENSLBEP00000016635	LOC109994280	ENSLBEP00000016635	ENSLBEP00000022996	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.981
ENSLBEP00000016635	LOC109996552	ENSLBEP00000016635	ENSLBEP00000018837	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.981
ENSLBEP00000016635	LOC109997240	ENSLBEP00000016635	ENSLBEP00000031048	RanBP2-type domain-containing protein.	RanBP-type and C3HC4-type zinc finger containing 1.	0.988
ENSLBEP00000016635	LOC109998255	ENSLBEP00000016635	ENSLBEP00000021966	RanBP2-type domain-containing protein.	Sharpin and rbck1 related.	0.987
LOC109985933	ENSLBEP00000000824	ENSLBEP00000021638	ENSLBEP00000000824	SHANK-associated RH domain interacting protein.	Si:dkey-181m9.8.	0.983
LOC109985933	LOC109994280	ENSLBEP00000021638	ENSLBEP00000022996	SHANK-associated RH domain interacting protein.	Uncharacterized protein.	0.981
LOC109985933	LOC109996552	ENSLBEP00000021638	ENSLBEP00000018837	SHANK-associated RH domain interacting protein.	Uncharacterized protein.	0.981
LOC109985933	LOC109997240	ENSLBEP00000021638	ENSLBEP00000031048	SHANK-associated RH domain interacting protein.	RanBP-type and C3HC4-type zinc finger containing 1.	0.987
LOC109985933	LOC109998255	ENSLBEP00000021638	ENSLBEP00000021966	SHANK-associated RH domain interacting protein.	Sharpin and rbck1 related.	0.987
LOC109994280	ENSLBEP00000000824	ENSLBEP00000022996	ENSLBEP00000000824	Uncharacterized protein.	Si:dkey-181m9.8.	0.894
LOC109994280	ENSLBEP00000016635	ENSLBEP00000022996	ENSLBEP00000016635	Uncharacterized protein.	RanBP2-type domain-containing protein.	0.981
LOC109994280	LOC109985933	ENSLBEP00000022996	ENSLBEP00000021638	Uncharacterized protein.	SHANK-associated RH domain interacting protein.	0.981
LOC109994280	LOC109997240	ENSLBEP00000022996	ENSLBEP00000031048	Uncharacterized protein.	RanBP-type and C3HC4-type zinc finger containing 1.	0.984