(28 nodes) Autophagosome maturation network (Labrus bergylta)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	atg14	Autophagy related 14. (488 aa)
	map1lc3b	Microtubule-associated protein 1 light chain 3 beta. (126 aa)
	spns1	Spinster homolog 1 (Drosophila). (508 aa)
	LOC109978860	Synaptosome associated protein 29. (250 aa)
	lamp2	Lysosomal-associated membrane protein 2. (398 aa)
	LOC109985822	Tectonin beta-propeller repeat containing 1b. (1129 aa)
	LIX1L	Limb and CNS expressed 1 like. (354 aa)
	LOC109991545	Synaptosome associated protein 29. (260 aa)
	snapin	SNAP associated protein. (152 aa)
	vps33a	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family. (600 aa)
	ENSLBEP00000027449	Uncharacterized protein. (230 aa)
	LOC110000677	Zgc:136908; Belongs to the AAA ATPase family. (802 aa)
	map1lc3a	Microtubule-associated protein 1 light chain 3 alpha. (121 aa)
	vps16	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (834 aa)
	pik3r4	Phosphoinositide-3-kinase, regulatory subunit 4. (878 aa)
	LOC109995992	Limb and CNS expressed 1. (355 aa)
	epg5	Ectopic P-granules autophagy protein 5 homolog (C. elegans). (2545 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	SNX14	Sorting nexin 14. (989 aa)
	map1lc3c	Microtubule-associated protein 1 light chain 3 gamma. (155 aa)
	LOC110001732	PX domain-containing protein. (351 aa)
	uvrag	UV radiation resistance associated gene. (734 aa)
	pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (884 aa)
	ENSLBEP00000002533	Vesicle-associated membrane protein 8 (endobrevin). (119 aa)
	stx17	Syntaxin 17; Belongs to the syntaxin family. (300 aa)
	rubcnl	DUF4206 domain-containing protein. (714 aa)
	ENSLBEP00000015634	Uncharacterized protein. (182 aa)
	tecpr1	Tectonin beta-propeller repeat containing 1a. (1133 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000002533	LOC109978860	ENSLBEP00000002533	ENSLBEP00000004301	Vesicle-associated membrane protein 8 (endobrevin).	Synaptosome associated protein 29.	0.992
ENSLBEP00000002533	LOC109991545	ENSLBEP00000002533	ENSLBEP00000032494	Vesicle-associated membrane protein 8 (endobrevin).	Synaptosome associated protein 29.	0.992
ENSLBEP00000002533	LOC110000677	ENSLBEP00000002533	ENSLBEP00000023113	Vesicle-associated membrane protein 8 (endobrevin).	Zgc:136908; Belongs to the AAA ATPase family.	0.520
ENSLBEP00000002533	atg14	ENSLBEP00000002533	ENSLBEP00000032538	Vesicle-associated membrane protein 8 (endobrevin).	Autophagy related 14.	0.639
ENSLBEP00000002533	epg5	ENSLBEP00000002533	ENSLBEP00000019985	Vesicle-associated membrane protein 8 (endobrevin).	Ectopic P-granules autophagy protein 5 homolog (C. elegans).	0.554
ENSLBEP00000002533	pik3c3	ENSLBEP00000002533	ENSLBEP00000000163	Vesicle-associated membrane protein 8 (endobrevin).	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.641
ENSLBEP00000002533	pik3r4	ENSLBEP00000002533	ENSLBEP00000020404	Vesicle-associated membrane protein 8 (endobrevin).	Phosphoinositide-3-kinase, regulatory subunit 4.	0.473
ENSLBEP00000002533	snapin	ENSLBEP00000002533	ENSLBEP00000032463	Vesicle-associated membrane protein 8 (endobrevin).	SNAP associated protein.	0.703
ENSLBEP00000002533	stx17	ENSLBEP00000002533	ENSLBEP00000003139	Vesicle-associated membrane protein 8 (endobrevin).	Syntaxin 17; Belongs to the syntaxin family.	0.999
ENSLBEP00000002533	vcp	ENSLBEP00000002533	ENSLBEP00000019661	Vesicle-associated membrane protein 8 (endobrevin).	Valosin containing protein; Belongs to the AAA ATPase family.	0.520
ENSLBEP00000002533	vps16	ENSLBEP00000002533	ENSLBEP00000020761	Vesicle-associated membrane protein 8 (endobrevin).	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	0.980
ENSLBEP00000002533	vps33a	ENSLBEP00000002533	ENSLBEP00000028005	Vesicle-associated membrane protein 8 (endobrevin).	VPS33A core subunit of CORVET and HOPS complexes; Belongs to the STXBP/unc-18/SEC1 family.	0.957
ENSLBEP00000015634	LOC110001732	ENSLBEP00000015634	ENSLBEP00000017842	Uncharacterized protein.	PX domain-containing protein.	0.778
ENSLBEP00000027449	LOC110001732	ENSLBEP00000027449	ENSLBEP00000017842	Uncharacterized protein.	PX domain-containing protein.	0.921
LIX1L	rubcnl	ENSLBEP00000035780	ENSLBEP00000016583	Limb and CNS expressed 1 like.	DUF4206 domain-containing protein.	0.828
LOC109978860	ENSLBEP00000002533	ENSLBEP00000004301	ENSLBEP00000002533	Synaptosome associated protein 29.	Vesicle-associated membrane protein 8 (endobrevin).	0.992
LOC109978860	LOC110000677	ENSLBEP00000004301	ENSLBEP00000023113	Synaptosome associated protein 29.	Zgc:136908; Belongs to the AAA ATPase family.	0.462
LOC109978860	atg14	ENSLBEP00000004301	ENSLBEP00000032538	Synaptosome associated protein 29.	Autophagy related 14.	0.940
LOC109978860	epg5	ENSLBEP00000004301	ENSLBEP00000019985	Synaptosome associated protein 29.	Ectopic P-granules autophagy protein 5 homolog (C. elegans).	0.506
LOC109978860	pik3c3	ENSLBEP00000004301	ENSLBEP00000000163	Synaptosome associated protein 29.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.426