(16 nodes) Motor neuron migration network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLBEP00000027960	Uncharacterized protein. (102 aa)
	LOC109976615	Uncharacterized protein. (281 aa)
	lhx1	LIM homeobox 1a. (407 aa)
	CDH2-2	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (915 aa)
	RELN	Reelin. (3414 aa)
	LOC109999476	Vang-like protein. (526 aa)
	phox2b	Paired like homeobox 2Bb. (286 aa)
	CDH2	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins. (910 aa)
	lrrc1	Leucine rich repeat containing 1. (525 aa)
	adgra3	Adhesion G protein-coupled receptor A3; Belongs to the G-protein coupled receptor 2 family. (1304 aa)
	scrib	Scribble planar cell polarity protein. (1709 aa)
	LOC109997059	DAB adaptor protein 1b. (580 aa)
	dab1	DAB adaptor protein 1a. (568 aa)
	VANGL2	Vang-like protein. (525 aa)
	vegfa	Vascular endothelial growth factor Ab; Belongs to the PDGF/VEGF growth factor family. (214 aa)
	rest	RE1-silencing transcription factor. (1018 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH2	CDH2-2	ENSLBEP00000023804	ENSLBEP00000037704	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.840
CDH2-2	CDH2	ENSLBEP00000037704	ENSLBEP00000023804	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	Cadherin 2; Cadherins are calcium-dependent cell adhesion proteins.	0.840
LOC109997059	RELN	ENSLBEP00000015805	ENSLBEP00000016792	DAB adaptor protein 1b.	Reelin.	0.828
LOC109999476	lrrc1	ENSLBEP00000020150	ENSLBEP00000002708	Vang-like protein.	Leucine rich repeat containing 1.	0.692
LOC109999476	scrib	ENSLBEP00000020150	ENSLBEP00000015923	Vang-like protein.	Scribble planar cell polarity protein.	0.692
RELN	LOC109997059	ENSLBEP00000016792	ENSLBEP00000015805	Reelin.	DAB adaptor protein 1b.	0.828
RELN	dab1	ENSLBEP00000016792	ENSLBEP00000012540	Reelin.	DAB adaptor protein 1a.	0.828
VANGL2	lrrc1	ENSLBEP00000005699	ENSLBEP00000002708	Vang-like protein.	Leucine rich repeat containing 1.	0.692
VANGL2	scrib	ENSLBEP00000005699	ENSLBEP00000015923	Vang-like protein.	Scribble planar cell polarity protein.	0.692
dab1	RELN	ENSLBEP00000012540	ENSLBEP00000016792	DAB adaptor protein 1a.	Reelin.	0.828
lrrc1	LOC109999476	ENSLBEP00000002708	ENSLBEP00000020150	Leucine rich repeat containing 1.	Vang-like protein.	0.692
lrrc1	VANGL2	ENSLBEP00000002708	ENSLBEP00000005699	Leucine rich repeat containing 1.	Vang-like protein.	0.692
scrib	LOC109999476	ENSLBEP00000015923	ENSLBEP00000020150	Scribble planar cell polarity protein.	Vang-like protein.	0.692
scrib	VANGL2	ENSLBEP00000015923	ENSLBEP00000005699	Scribble planar cell polarity protein.	Vang-like protein.	0.692