(12 nodes) G protein-coupled receptor complex network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109992035	Gamma-aminobutyric acid (GABA) B receptor, 1a. (997 aa)
	LOC110003859	G protein-coupled receptor 156. (506 aa)
	RAMP1	Receptor activity modifying protein 1. (166 aa)
	ramp2	Receptor (G protein-coupled) activity modifying protein 2. (206 aa)
	LOC109982440	Gamma-aminobutyric acid (GABA) B receptor, 2. (913 aa)
	LOC110000409	Uncharacterized protein. (210 aa)
	ENSLBEP00000007467	Uncharacterized protein. (156 aa)
	ENSLBEP00000009008	Uncharacterized protein. (91 aa)
	ENSLBEP00000011639	Si:ch73-334d15.2. (165 aa)
	gabbr1	Gamma-aminobutyric acid (GABA) B receptor, 1b. (997 aa)
	LOC109990156	Uncharacterized protein. (149 aa)
	ENSLBEP00000019289	Uncharacterized protein. (166 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000007467	ENSLBEP00000011639	ENSLBEP00000007467	ENSLBEP00000011639	Uncharacterized protein.	Si:ch73-334d15.2.	0.843
ENSLBEP00000007467	LOC109990156	ENSLBEP00000007467	ENSLBEP00000018073	Uncharacterized protein.	Uncharacterized protein.	0.652
ENSLBEP00000007467	LOC110000409	ENSLBEP00000007467	ENSLBEP00000004780	Uncharacterized protein.	Uncharacterized protein.	0.857
ENSLBEP00000007467	ramp2	ENSLBEP00000007467	ENSLBEP00000029895	Uncharacterized protein.	Receptor (G protein-coupled) activity modifying protein 2.	0.843
ENSLBEP00000009008	ENSLBEP00000011639	ENSLBEP00000009008	ENSLBEP00000011639	Uncharacterized protein.	Si:ch73-334d15.2.	0.864
ENSLBEP00000009008	LOC110000409	ENSLBEP00000009008	ENSLBEP00000004780	Uncharacterized protein.	Uncharacterized protein.	0.864
ENSLBEP00000009008	ramp2	ENSLBEP00000009008	ENSLBEP00000029895	Uncharacterized protein.	Receptor (G protein-coupled) activity modifying protein 2.	0.848
ENSLBEP00000011639	ENSLBEP00000007467	ENSLBEP00000011639	ENSLBEP00000007467	Si:ch73-334d15.2.	Uncharacterized protein.	0.843
ENSLBEP00000011639	ENSLBEP00000009008	ENSLBEP00000011639	ENSLBEP00000009008	Si:ch73-334d15.2.	Uncharacterized protein.	0.864
ENSLBEP00000011639	LOC109990156	ENSLBEP00000011639	ENSLBEP00000018073	Si:ch73-334d15.2.	Uncharacterized protein.	0.864
ENSLBEP00000011639	LOC110000409	ENSLBEP00000011639	ENSLBEP00000004780	Si:ch73-334d15.2.	Uncharacterized protein.	0.930
ENSLBEP00000011639	RAMP1	ENSLBEP00000011639	ENSLBEP00000035358	Si:ch73-334d15.2.	Receptor activity modifying protein 1.	0.858
ENSLBEP00000019289	LOC110003859	ENSLBEP00000019289	ENSLBEP00000025429	Uncharacterized protein.	G protein-coupled receptor 156.	0.828
LOC109982440	LOC110003859	ENSLBEP00000001268	ENSLBEP00000025429	Gamma-aminobutyric acid (GABA) B receptor, 2.	G protein-coupled receptor 156.	0.843
LOC109990156	ENSLBEP00000007467	ENSLBEP00000018073	ENSLBEP00000007467	Uncharacterized protein.	Uncharacterized protein.	0.652
LOC109990156	ENSLBEP00000011639	ENSLBEP00000018073	ENSLBEP00000011639	Uncharacterized protein.	Si:ch73-334d15.2.	0.864
LOC109990156	LOC110000409	ENSLBEP00000018073	ENSLBEP00000004780	Uncharacterized protein.	Uncharacterized protein.	0.864
LOC109990156	ramp2	ENSLBEP00000018073	ENSLBEP00000029895	Uncharacterized protein.	Receptor (G protein-coupled) activity modifying protein 2.	0.848
LOC109992035	LOC110003859	ENSLBEP00000022239	ENSLBEP00000025429	Gamma-aminobutyric acid (GABA) B receptor, 1a.	G protein-coupled receptor 156.	0.828
LOC110000409	ENSLBEP00000007467	ENSLBEP00000004780	ENSLBEP00000007467	Uncharacterized protein.	Uncharacterized protein.	0.857