(7 nodes) Sulfatide binding network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cln3	Battenin. (436 aa)
	manf	Mesencephalic astrocyte-derived neurotrophic factor. (180 aa)
	ppt1	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile). (303 aa)
	LOC109986843	CLN6 transmembrane ER protein a. (303 aa)
	ENSLBEP00000018463	Uncharacterized protein. (190 aa)
	ENSLBEP00000014280	Uncharacterized protein. (87 aa)
	ENSLBEP00000004813	CLN6 transmembrane ER protein b. (301 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000004813	cln3	ENSLBEP00000004813	ENSLBEP00000038307	CLN6 transmembrane ER protein b.	Battenin.	0.517
ENSLBEP00000014280	cln3	ENSLBEP00000014280	ENSLBEP00000038307	Uncharacterized protein.	Battenin.	0.585
LOC109986843	cln3	ENSLBEP00000024187	ENSLBEP00000038307	CLN6 transmembrane ER protein a.	Battenin.	0.517
cln3	ENSLBEP00000004813	ENSLBEP00000038307	ENSLBEP00000004813	Battenin.	CLN6 transmembrane ER protein b.	0.517
cln3	ENSLBEP00000014280	ENSLBEP00000038307	ENSLBEP00000014280	Battenin.	Uncharacterized protein.	0.585
cln3	LOC109986843	ENSLBEP00000038307	ENSLBEP00000024187	Battenin.	CLN6 transmembrane ER protein a.	0.517
cln3	ppt1	ENSLBEP00000038307	ENSLBEP00000023579	Battenin.	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	0.585
ppt1	cln3	ENSLBEP00000023579	ENSLBEP00000038307	Palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile).	Battenin.	0.585