7 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109990297	Uncharacterized protein. (193 aa)
	RHOB	Ras homolog family member B. (141 aa)
	LOC109981514	Uncharacterized protein. (193 aa)
	LOC109984918	Uncharacterized protein. (205 aa)
	LOC109993560	Uncharacterized protein. (202 aa)
	LOC109984913	Uncharacterized protein. (193 aa)
	LOC109980884	Ras homolog family member Ca. (196 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC109980884	LOC109984913	ENSLBEP00000002979	ENSLBEP00000010277	Ras homolog family member Ca.	Uncharacterized protein.	0.659
LOC109981514	LOC109984913	ENSLBEP00000020602	ENSLBEP00000010277	Uncharacterized protein.	Uncharacterized protein.	0.659
LOC109984913	LOC109980884	ENSLBEP00000010277	ENSLBEP00000002979	Uncharacterized protein.	Ras homolog family member Ca.	0.659
LOC109984913	LOC109981514	ENSLBEP00000010277	ENSLBEP00000020602	Uncharacterized protein.	Uncharacterized protein.	0.659
LOC109984913	LOC109984918	ENSLBEP00000010277	ENSLBEP00000012644	Uncharacterized protein.	Uncharacterized protein.	0.659
LOC109984913	LOC109990297	ENSLBEP00000010277	ENSLBEP00000027144	Uncharacterized protein.	Uncharacterized protein.	0.659
LOC109984913	LOC109993560	ENSLBEP00000010277	ENSLBEP00000010992	Uncharacterized protein.	Uncharacterized protein.	0.659
LOC109984913	RHOB	ENSLBEP00000010277	ENSLBEP00000026886	Uncharacterized protein.	Ras homolog family member B.	0.659
LOC109984918	LOC109984913	ENSLBEP00000012644	ENSLBEP00000010277	Uncharacterized protein.	Uncharacterized protein.	0.659
LOC109990297	LOC109984913	ENSLBEP00000027144	ENSLBEP00000010277	Uncharacterized protein.	Uncharacterized protein.	0.659
LOC109993560	LOC109984913	ENSLBEP00000010992	ENSLBEP00000010277	Uncharacterized protein.	Uncharacterized protein.	0.659
RHOB	LOC109984913	ENSLBEP00000026886	ENSLBEP00000010277	Ras homolog family member B.	Uncharacterized protein.	0.659