12 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109994433	Cytoplasmic polyadenylation element binding protein 4a. (747 aa)
	lsm14a	LSM14A mRNA processing body assembly factor b. (448 aa)
	CPEB4	Cytoplasmic polyadenylation element binding protein 4. (751 aa)
	LOC109998717	LSM14A mRNA processing body assembly factor a. (431 aa)
	stau2	Staufen double-stranded RNA binding protein 2. (673 aa)
	cpeb1	Cytoplasmic polyadenylation element binding protein 1b. (553 aa)
	LOC109989628	Uncharacterized protein. (768 aa)
	PKP3	Plakophilin 3a. (795 aa)
	stau1	Staufen double-stranded RNA binding protein 1. (691 aa)
	LOC109982502	Cytoplasmic polyadenylation element binding protein 2. (448 aa)
	LOC109998436	Cytoplasmic polyadenylation element binding protein 3. (674 aa)
	LOC109987559	Uncharacterized protein. (281 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPEB4	LOC109982502	ENSLBEP00000002193	ENSLBEP00000030006	Cytoplasmic polyadenylation element binding protein 4.	Cytoplasmic polyadenylation element binding protein 2.	0.876
CPEB4	LOC109987559	ENSLBEP00000002193	ENSLBEP00000037444	Cytoplasmic polyadenylation element binding protein 4.	Uncharacterized protein.	0.876
CPEB4	cpeb1	ENSLBEP00000002193	ENSLBEP00000022627	Cytoplasmic polyadenylation element binding protein 4.	Cytoplasmic polyadenylation element binding protein 1b.	0.887
LOC109982502	CPEB4	ENSLBEP00000030006	ENSLBEP00000002193	Cytoplasmic polyadenylation element binding protein 2.	Cytoplasmic polyadenylation element binding protein 4.	0.876
LOC109982502	LOC109998436	ENSLBEP00000030006	ENSLBEP00000034546	Cytoplasmic polyadenylation element binding protein 2.	Cytoplasmic polyadenylation element binding protein 3.	0.876
LOC109982502	cpeb1	ENSLBEP00000030006	ENSLBEP00000022627	Cytoplasmic polyadenylation element binding protein 2.	Cytoplasmic polyadenylation element binding protein 1b.	0.885
LOC109987559	CPEB4	ENSLBEP00000037444	ENSLBEP00000002193	Uncharacterized protein.	Cytoplasmic polyadenylation element binding protein 4.	0.876
LOC109987559	LOC109998436	ENSLBEP00000037444	ENSLBEP00000034546	Uncharacterized protein.	Cytoplasmic polyadenylation element binding protein 3.	0.876
LOC109987559	cpeb1	ENSLBEP00000037444	ENSLBEP00000022627	Uncharacterized protein.	Cytoplasmic polyadenylation element binding protein 1b.	0.885
LOC109994433	cpeb1	ENSLBEP00000030228	ENSLBEP00000022627	Cytoplasmic polyadenylation element binding protein 4a.	Cytoplasmic polyadenylation element binding protein 1b.	0.831
LOC109998436	LOC109982502	ENSLBEP00000034546	ENSLBEP00000030006	Cytoplasmic polyadenylation element binding protein 3.	Cytoplasmic polyadenylation element binding protein 2.	0.876
LOC109998436	LOC109987559	ENSLBEP00000034546	ENSLBEP00000037444	Cytoplasmic polyadenylation element binding protein 3.	Uncharacterized protein.	0.876
LOC109998436	cpeb1	ENSLBEP00000034546	ENSLBEP00000022627	Cytoplasmic polyadenylation element binding protein 3.	Cytoplasmic polyadenylation element binding protein 1b.	0.885
LOC109998717	cpeb1	ENSLBEP00000013655	ENSLBEP00000022627	LSM14A mRNA processing body assembly factor a.	Cytoplasmic polyadenylation element binding protein 1b.	0.423
cpeb1	CPEB4	ENSLBEP00000022627	ENSLBEP00000002193	Cytoplasmic polyadenylation element binding protein 1b.	Cytoplasmic polyadenylation element binding protein 4.	0.887
cpeb1	LOC109982502	ENSLBEP00000022627	ENSLBEP00000030006	Cytoplasmic polyadenylation element binding protein 1b.	Cytoplasmic polyadenylation element binding protein 2.	0.885
cpeb1	LOC109987559	ENSLBEP00000022627	ENSLBEP00000037444	Cytoplasmic polyadenylation element binding protein 1b.	Uncharacterized protein.	0.885
cpeb1	LOC109994433	ENSLBEP00000022627	ENSLBEP00000030228	Cytoplasmic polyadenylation element binding protein 1b.	Cytoplasmic polyadenylation element binding protein 4a.	0.831
cpeb1	LOC109998436	ENSLBEP00000022627	ENSLBEP00000034546	Cytoplasmic polyadenylation element binding protein 1b.	Cytoplasmic polyadenylation element binding protein 3.	0.885
cpeb1	LOC109998717	ENSLBEP00000022627	ENSLBEP00000013655	Cytoplasmic polyadenylation element binding protein 1b.	LSM14A mRNA processing body assembly factor a.	0.423