(26 nodes) Regulation of transcription regulatory region DNA binding network (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLBEP00000009221	Uncharacterized protein. (473 aa)
	zmpste24	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (467 aa)
	ENSLBEP00000006346	Uncharacterized protein. (468 aa)
	ENSLBEP00000006290	PWWP domain-containing protein. (707 aa)
	ENSLBEP00000005796	Ring finger protein 220b. (243 aa)
	ENSLBEP00000005779	RING-type domain-containing protein. (197 aa)
	ep300	E1A binding protein p300 a. (2577 aa)
	msx1	Muscle segment homeobox 1a. (278 aa)
	dot1l	Histone-lysine N-methyltransferase, H3 lysine-79 specific. (1459 aa)
	LOC109983926	GATA binding protein 1a. (421 aa)
	LOC109995483	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	ENSLBEP00000022272	TAZ-type domain-containing protein. (362 aa)
	LOC110000594	Ankyrin repeat domain 33ba. (526 aa)
	LOC109990758	Muscle segment homeobox 3. (250 aa)
	ddit3	DNA-damage-inducible transcript 3. (311 aa)
	LOC109984878	Ankyrin repeat domain 33Aa. (431 aa)
	LOC109999402	Ring finger protein 220a. (566 aa)
	LOC109992369	Grancalcin. (251 aa)
	LOC109993764	Ankyrin repeat domain 33. (457 aa)
	HAND1	Heart and neural crest derivatives expressed 1. (191 aa)
	LOC109993896	Ankyrin repeat domain 33Bb. (482 aa)
	sri	Uncharacterized protein. (179 aa)
	LOC110004120	E1A binding protein p300 b. (2680 aa)
	rb1	Retinoblastoma 1. (899 aa)
	gtf2b	General transcription factor IIB. (322 aa)
	znf593	Zinc finger protein 593. (129 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000005779	ENSLBEP00000005796	ENSLBEP00000005779	ENSLBEP00000005796	RING-type domain-containing protein.	Ring finger protein 220b.	0.899
ENSLBEP00000005796	ENSLBEP00000005779	ENSLBEP00000005796	ENSLBEP00000005779	Ring finger protein 220b.	RING-type domain-containing protein.	0.899
ENSLBEP00000006290	ENSLBEP00000006346	ENSLBEP00000006290	ENSLBEP00000006346	PWWP domain-containing protein.	Uncharacterized protein.	0.800
ENSLBEP00000006290	ENSLBEP00000009221	ENSLBEP00000006290	ENSLBEP00000009221	PWWP domain-containing protein.	Uncharacterized protein.	0.778
ENSLBEP00000006290	ENSLBEP00000022272	ENSLBEP00000006290	ENSLBEP00000022272	PWWP domain-containing protein.	TAZ-type domain-containing protein.	0.523
ENSLBEP00000006290	LOC110004120	ENSLBEP00000006290	ENSLBEP00000035749	PWWP domain-containing protein.	E1A binding protein p300 b.	0.523
ENSLBEP00000006290	dot1l	ENSLBEP00000006290	ENSLBEP00000024159	PWWP domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific.	0.854
ENSLBEP00000006290	ep300	ENSLBEP00000006290	ENSLBEP00000003268	PWWP domain-containing protein.	E1A binding protein p300 a.	0.523
ENSLBEP00000006346	ENSLBEP00000006290	ENSLBEP00000006346	ENSLBEP00000006290	Uncharacterized protein.	PWWP domain-containing protein.	0.800
ENSLBEP00000006346	ENSLBEP00000022272	ENSLBEP00000006346	ENSLBEP00000022272	Uncharacterized protein.	TAZ-type domain-containing protein.	0.523
ENSLBEP00000006346	LOC110004120	ENSLBEP00000006346	ENSLBEP00000035749	Uncharacterized protein.	E1A binding protein p300 b.	0.523
ENSLBEP00000006346	dot1l	ENSLBEP00000006346	ENSLBEP00000024159	Uncharacterized protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific.	0.854
ENSLBEP00000006346	ep300	ENSLBEP00000006346	ENSLBEP00000003268	Uncharacterized protein.	E1A binding protein p300 a.	0.523
ENSLBEP00000009221	ENSLBEP00000006290	ENSLBEP00000009221	ENSLBEP00000006290	Uncharacterized protein.	PWWP domain-containing protein.	0.778
ENSLBEP00000009221	ENSLBEP00000022272	ENSLBEP00000009221	ENSLBEP00000022272	Uncharacterized protein.	TAZ-type domain-containing protein.	0.523
ENSLBEP00000009221	LOC110004120	ENSLBEP00000009221	ENSLBEP00000035749	Uncharacterized protein.	E1A binding protein p300 b.	0.523
ENSLBEP00000009221	dot1l	ENSLBEP00000009221	ENSLBEP00000024159	Uncharacterized protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific.	0.854
ENSLBEP00000009221	ep300	ENSLBEP00000009221	ENSLBEP00000003268	Uncharacterized protein.	E1A binding protein p300 a.	0.523
ENSLBEP00000022272	ENSLBEP00000006290	ENSLBEP00000022272	ENSLBEP00000006290	TAZ-type domain-containing protein.	PWWP domain-containing protein.	0.523
ENSLBEP00000022272	ENSLBEP00000006346	ENSLBEP00000022272	ENSLBEP00000006346	TAZ-type domain-containing protein.	Uncharacterized protein.	0.523