34 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLBEP00000031224	EGF-like domain-containing protein. (88 aa)
	LOC109995136	NMDA receptor synaptonuclear signaling and neuronal migration factor b. (560 aa)
	rapgef2	Rap guanine nucleotide exchange factor (GEF) 2. (1455 aa)
	LOC109978841	Laminin N-terminal domain-containing protein. (314 aa)
	LOC109987090	NMDA receptor synaptonuclear signaling and neuronal migration factor a. (586 aa)
	LOC109983653	Fibronectin leucine rich transmembrane protein 2. (660 aa)
	LOC109990587	Neuregulin 3b. (765 aa)
	LOC109995857	Uncharacterized protein. (259 aa)
	ENSLBEP00000009522	Protein kinase domain-containing protein. (94 aa)
	ENSLBEP00000013918	Rho/rac guanine nucleotide exchange factor (GEF) 2. (862 aa)
	srgap2	SLIT-ROBO Rho GTPase activating protein 2. (1130 aa)
	RELN	Reelin. (3414 aa)
	LOC109998214	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (865 aa)
	LOC109986548	Scratch family zinc finger 2. (320 aa)
	LOC109975356	Vav 3 guanine nucleotide exchange factor b. (456 aa)
	LOC109989134	Netrin g2a. (579 aa)
	tnn	Tenascin N. (1119 aa)
	LOC109998312	Fibronectin leucine rich transmembrane protein 2. (642 aa)
	ENSLBEP00000026636	Ig-like domain-containing protein. (259 aa)
	LOC110003116	Uncharacterized protein. (913 aa)
	plaa	Phospholipase A2-activating protein. (798 aa)
	LOC109997833	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (803 aa)
	LOC109998917	ZU5 domain-containing protein. (712 aa)
	ENSLBEP00000030747	Uncharacterized protein. (804 aa)
	gata3	GATA binding protein 3. (439 aa)
	LOC109998935	Rho guanine nucleotide exchange factor (GEF) 1a. (858 aa)
	LOC109984480	Netrin G2. (633 aa)
	ntng1	Netrin g1a. (546 aa)
	nexmif	Neurite extension and migration factor b. (1377 aa)
	LOC109995199	Unc-5 netrin receptor Db. (961 aa)
	ENSLBEP00000037432	Shootin 1. (472 aa)
	LOC109988724	Si:ch211-1o7.3. (584 aa)
	LOC109988172	Uncharacterized protein. (323 aa)
	ENSLBEP00000038571	Uncharacterized protein. (406 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000026636	LOC109975356	ENSLBEP00000026636	ENSLBEP00000020235	Ig-like domain-containing protein.	Vav 3 guanine nucleotide exchange factor b.	0.582
ENSLBEP00000026636	LOC109978841	ENSLBEP00000026636	ENSLBEP00000003744	Ig-like domain-containing protein.	Laminin N-terminal domain-containing protein.	0.570
ENSLBEP00000026636	LOC109983653	ENSLBEP00000026636	ENSLBEP00000006915	Ig-like domain-containing protein.	Fibronectin leucine rich transmembrane protein 2.	0.849
ENSLBEP00000026636	LOC109984480	ENSLBEP00000026636	ENSLBEP00000031610	Ig-like domain-containing protein.	Netrin G2.	0.570
ENSLBEP00000026636	LOC109989134	ENSLBEP00000026636	ENSLBEP00000020243	Ig-like domain-containing protein.	Netrin g2a.	0.570
ENSLBEP00000026636	LOC109998312	ENSLBEP00000026636	ENSLBEP00000026366	Ig-like domain-containing protein.	Fibronectin leucine rich transmembrane protein 2.	0.849
ENSLBEP00000026636	LOC109998917	ENSLBEP00000026636	ENSLBEP00000029455	Ig-like domain-containing protein.	ZU5 domain-containing protein.	0.635
ENSLBEP00000026636	ntng1	ENSLBEP00000026636	ENSLBEP00000033193	Ig-like domain-containing protein.	Netrin g1a.	0.582
ENSLBEP00000030747	LOC109975356	ENSLBEP00000030747	ENSLBEP00000020235	Uncharacterized protein.	Vav 3 guanine nucleotide exchange factor b.	0.780
ENSLBEP00000030747	ntng1	ENSLBEP00000030747	ENSLBEP00000033193	Uncharacterized protein.	Netrin g1a.	0.780
ENSLBEP00000038571	LOC109975356	ENSLBEP00000038571	ENSLBEP00000020235	Uncharacterized protein.	Vav 3 guanine nucleotide exchange factor b.	0.780
ENSLBEP00000038571	ntng1	ENSLBEP00000038571	ENSLBEP00000033193	Uncharacterized protein.	Netrin g1a.	0.780
LOC109975356	ENSLBEP00000026636	ENSLBEP00000020235	ENSLBEP00000026636	Vav 3 guanine nucleotide exchange factor b.	Ig-like domain-containing protein.	0.582
LOC109975356	ENSLBEP00000030747	ENSLBEP00000020235	ENSLBEP00000030747	Vav 3 guanine nucleotide exchange factor b.	Uncharacterized protein.	0.780
LOC109975356	ENSLBEP00000038571	ENSLBEP00000020235	ENSLBEP00000038571	Vav 3 guanine nucleotide exchange factor b.	Uncharacterized protein.	0.780
LOC109975356	LOC109978841	ENSLBEP00000020235	ENSLBEP00000003744	Vav 3 guanine nucleotide exchange factor b.	Laminin N-terminal domain-containing protein.	0.469
LOC109975356	LOC109983653	ENSLBEP00000020235	ENSLBEP00000006915	Vav 3 guanine nucleotide exchange factor b.	Fibronectin leucine rich transmembrane protein 2.	0.800
LOC109975356	LOC109984480	ENSLBEP00000020235	ENSLBEP00000031610	Vav 3 guanine nucleotide exchange factor b.	Netrin G2.	0.470
LOC109975356	LOC109989134	ENSLBEP00000020235	ENSLBEP00000020243	Vav 3 guanine nucleotide exchange factor b.	Netrin g2a.	0.477
LOC109975356	LOC109995199	ENSLBEP00000020235	ENSLBEP00000036391	Vav 3 guanine nucleotide exchange factor b.	Unc-5 netrin receptor Db.	0.582