58 items (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC109997511	HP domain-containing protein. (1653 aa)
	LOC110004187	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (439 aa)
	LOC109987536	Septin 7a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (475 aa)
	svil	Supervillin a. (1735 aa)
	LOC109988036	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (361 aa)
	zfyve19	Zinc finger, FYVE domain containing 19. (430 aa)
	LOC109991584	Zgc:63587; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (353 aa)
	septin5	Septin 5a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (376 aa)
	ENSLBEP00000033037	Uncharacterized protein. (421 aa)
	ENSLBEP00000032958	ADP-ribosylation factor 6a; Belongs to the small GTPase superfamily. Arf family. (182 aa)
	LOC110002747	Uncharacterized protein. (210 aa)
	LOC109988168	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)
	ENSLBEP00000029461	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (112 aa)
	LOC109997211	RAB11 family interacting protein 4 (class II) a. (604 aa)
	LOC109990297	Uncharacterized protein. (193 aa)
	ENSLBEP00000026991	ANK_REP_REGION domain-containing protein. (188 aa)
	RHOB	Ras homolog family member B. (141 aa)
	klhdc8b	Kelch domain containing 8B. (359 aa)
	pkn3	Protein kinase N3. (864 aa)
	LOC109999551	WD repeat domain 73. (377 aa)
	pstpip1	Proline-serine-threonine phosphatase interacting protein 1a. (410 aa)
	ENSLBEP00000022618	LIM zinc-binding domain-containing protein. (94 aa)
	LOC109992482	LIM zinc-binding domain-containing protein. (679 aa)
	LOC110002516	Uncharacterized protein. (794 aa)
	LOC109981514	Uncharacterized protein. (193 aa)
	LOC109982171	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (917 aa)
	rab11fip3	RAB11 family interacting protein 3 (class II). (1074 aa)
	ENSLBEP00000018764	annotation not available (60 aa)
	TMEM19	Transmembrane protein 19. (290 aa)
	ENSLBEP00000014557	LIM zinc-binding domain-containing protein. (137 aa)
	ENSLBEP00000013884	Uncharacterized protein. (79 aa)
	ENSLBEP00000013812	Uncharacterized protein. (371 aa)
	mastl	Microtubule associated serine/threonine kinase-like. (797 aa)
	pkn1	Protein kinase N1a. (921 aa)
	ENSLBEP00000012769	LIM zinc-binding domain-containing protein. (93 aa)
	LOC109984918	Uncharacterized protein. (205 aa)
	LOC109983146	Kelch domain containing 8A. (351 aa)
	LOC109993560	Uncharacterized protein. (202 aa)
	LOC110004452	Uncharacterized protein. (961 aa)
	LOC109984913	Uncharacterized protein. (193 aa)
	LOC109995983	Septin 2; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (444 aa)
	pkn2	Protein kinase N2. (899 aa)
	LOC109998693	Septin 7b; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (426 aa)
	LOC109990578	Supervillin d. (1290 aa)
	LOC109983120	Supervillin c. (1615 aa)
	ENSLBEP00000000242	Septin 4a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (367 aa)
	ppp1cc	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)
	LOC109981353	Pellino E3 ubiquitin protein ligase family member 2. (424 aa)
	LOC109993442	RAB11 family interacting protein 4 (class II) b. (607 aa)
	LOC109980884	Ras homolog family member Ca. (196 aa)
	lima1	LIM domain and actin binding 1a. (690 aa)
	ENSLBEP00000003355	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (121 aa)
	LOC109976768	RAB21, member RAS oncogene family. (217 aa)
	ENSLBEP00000004440	LIM zinc-binding domain-containing protein. (1233 aa)
	LOC109992897	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (342 aa)
	KIF23	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (974 aa)
	LOC109988092	Proline-serine-threonine phosphatase interacting protein 1b. (401 aa)
	LOC109998042	Septin 15; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family. (433 aa)

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000000242	ENSLBEP00000013884	ENSLBEP00000000242	ENSLBEP00000013884	Septin 4a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Uncharacterized protein.	0.669
ENSLBEP00000000242	LOC109987536	ENSLBEP00000000242	ENSLBEP00000037141	Septin 4a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Septin 7a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.679
ENSLBEP00000000242	LOC109988036	ENSLBEP00000000242	ENSLBEP00000035553	Septin 4a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Septin-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.841
ENSLBEP00000000242	LOC109991584	ENSLBEP00000000242	ENSLBEP00000033852	Septin 4a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Zgc:63587; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.653
ENSLBEP00000000242	LOC109995983	ENSLBEP00000000242	ENSLBEP00000009544	Septin 4a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Septin 2; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.654
ENSLBEP00000000242	LOC109998042	ENSLBEP00000000242	ENSLBEP00000008801	Septin 4a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Septin 15; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.680
ENSLBEP00000000242	LOC109998693	ENSLBEP00000000242	ENSLBEP00000009243	Septin 4a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	Septin 7b; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.679
ENSLBEP00000003355	KIF23	ENSLBEP00000003355	ENSLBEP00000005538	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.907
ENSLBEP00000003355	LOC109980884	ENSLBEP00000003355	ENSLBEP00000002979	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Ras homolog family member Ca.	0.514
ENSLBEP00000003355	LOC109981514	ENSLBEP00000003355	ENSLBEP00000020602	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.514
ENSLBEP00000003355	LOC109982171	ENSLBEP00000003355	ENSLBEP00000019459	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.907
ENSLBEP00000003355	LOC109984913	ENSLBEP00000003355	ENSLBEP00000010277	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.514
ENSLBEP00000003355	LOC109984918	ENSLBEP00000003355	ENSLBEP00000012644	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.514
ENSLBEP00000003355	LOC109990297	ENSLBEP00000003355	ENSLBEP00000027144	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.514
ENSLBEP00000003355	LOC109993442	ENSLBEP00000003355	ENSLBEP00000002821	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	RAB11 family interacting protein 4 (class II) b.	0.568
ENSLBEP00000003355	LOC109993560	ENSLBEP00000003355	ENSLBEP00000010992	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.514
ENSLBEP00000003355	LOC109997211	ENSLBEP00000003355	ENSLBEP00000028963	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	RAB11 family interacting protein 4 (class II) a.	0.568
ENSLBEP00000003355	RHOB	ENSLBEP00000003355	ENSLBEP00000026886	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Ras homolog family member B.	0.514
ENSLBEP00000003355	rab11fip3	ENSLBEP00000003355	ENSLBEP00000019102	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	RAB11 family interacting protein 3 (class II).	0.568
ENSLBEP00000013884	ENSLBEP00000000242	ENSLBEP00000013884	ENSLBEP00000000242	Uncharacterized protein.	Septin 4a; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Septin GTPase family.	0.669